View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_low_31 (Length: 242)
Name: NF11048_low_31
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 10103796 - 10103642
Alignment:
| Q |
17 |
ctatcatctccaatgtatattggtagaacatcatcaaaggtgttatatccaagagtgtcaagaaaatacattagagcatcacctttattccagtttacat |
116 |
Q |
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| T |
10103796 |
ctatcatctccaatgtatattggtagaacatcatcaaaggtgttatatccaagagtgtcaagaaaatacattagagcatcgcctttattccagttcacat |
10103697 |
T |
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| Q |
117 |
ttgggcgtatctccattatctaatataaaacattaaacttatgttaagtttaaga |
171 |
Q |
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| T |
10103696 |
ttgggcgtatctccataatctaatataaaacattcaacttatgttaagtttaaga |
10103642 |
T |
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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 10103559 - 10103515
Alignment:
| Q |
171 |
atttaaagacagataaataagagagatatttcattttctctgtca |
215 |
Q |
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| T |
10103559 |
atttaaagactgataaataagaaagagatttcattttctccgtca |
10103515 |
T |
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