View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11048_low_4 (Length: 575)

Name: NF11048_low_4
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11048_low_4
NF11048_low_4
[»] chr8 (7 HSPs)
chr8 (273-542)||(11758156-11758442)
chr8 (397-489)||(33581806-33581898)
chr8 (406-489)||(8052-8135)
chr8 (398-479)||(18651670-18651751)
chr8 (404-489)||(10545783-10545868)
chr8 (102-147)||(44340523-44340568)
chr8 (398-446)||(43846273-43846321)
[»] scaffold0325 (1 HSPs)
scaffold0325 (397-489)||(14675-14767)
[»] chr7 (6 HSPs)
chr7 (401-489)||(47588070-47588158)
chr7 (424-475)||(33607905-33607956)
chr7 (404-489)||(46866120-46866205)
chr7 (404-454)||(33607957-33608007)
chr7 (425-455)||(35720293-35720323)
chr7 (426-474)||(16862791-16862839)
[»] chr3 (4 HSPs)
chr3 (185-273)||(8005139-8005229)
chr3 (78-125)||(31218511-31218558)
chr3 (79-140)||(47865899-47865960)
chr3 (425-481)||(17505352-17505408)
[»] chr2 (5 HSPs)
chr2 (183-235)||(40186432-40186485)
chr2 (78-149)||(41932160-41932231)
chr2 (398-454)||(13387340-13387396)
chr2 (426-455)||(34233612-34233641)
chr2 (427-475)||(44540743-44540791)
[»] chr1 (5 HSPs)
chr1 (404-452)||(22677810-22677858)
chr1 (81-140)||(24814724-24814783)
chr1 (391-443)||(34001463-34001515)
chr1 (85-140)||(32979609-32979664)
chr1 (451-489)||(22677878-22677916)
[»] chr6 (2 HSPs)
chr6 (426-489)||(7526581-7526644)
chr6 (398-448)||(7526597-7526649)
[»] scaffold0045 (2 HSPs)
scaffold0045 (83-125)||(65160-65202)
scaffold0045 (83-125)||(72492-72534)
[»] chr4 (7 HSPs)
chr4 (78-132)||(29152932-29152986)
chr4 (101-147)||(32521222-32521268)
chr4 (81-140)||(13492436-13492494)
chr4 (183-272)||(17261060-17261151)
chr4 (78-120)||(53967205-53967247)
chr4 (198-256)||(4427256-4427316)
chr4 (398-442)||(16962841-16962885)
[»] chr5 (1 HSPs)
chr5 (414-454)||(32303647-32303687)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 273 - 542
Target Start/End: Complemental strand, 11758442 - 11758156
Alignment:
Q  273 aaaagaatgttgatccttcggttagagatgcggtgaaaatagtttgttttatgggttttattgaaaatgtgggctgaactcattttcatttttaataggg 372  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  11758442 aaaagaatgttgatcctccggttagagatgcggtgaaaatggtttgttttatgggttttattggaaatgtgggttgaactcattttcatttttaataggg 11758343  T
Q  373 tatggctcttctcaattttattttattttgttcattcccaacaaaatagtcta---------------------gcgtgagttaactcacgcatgagtat 451  Q
    ||  ||||||| |||     |||| ||||  ||||| |||||||||||| |||                     |||||||||||||||||||| |||||    
T  11758342 tacagctcttcccaa-----ttttttttttctcatttccaacaaaatagcctaactcatgtacgagtattctaagcgtgagttaactcacgcataagtat 11758248  T
Q  452 tttgtgttgggaatgagcaaaaaatgttgtgaaaagag-aagtttctttttaatatggatctagactataatgtgcgtttaaatgaagaata 542  Q
    |||||||||||||||| ||||||||||||||| || || || |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11758247 tttgtgttgggaatgaacaaaaaatgttgtgagaatagcaattttctttttaatatggatctagaccataatgtgcgtttaaatgaagaata 11758156  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 397 - 489
Target Start/End: Complemental strand, 33581898 - 33581806
Alignment:
Q  397 attttgttcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 489  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||| |||||    
T  33581898 attttgctcattcccaacaaaatagcctagcgtgagttaactcacgcaggagtattttttgttgtgaatgagcaaaaattgttgtgagaagag 33581806  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 406 - 489
Target Start/End: Complemental strand, 8135 - 8052
Alignment:
Q  406 attcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 489  Q
    |||| ||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||||| |||||||||||| |||||    
T  8135 attcacaacaaaatagcctagcgtaagttaactgacgcataagtattttgtgttgggaatgagcataaaatgttgtgagaagag 8052  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 398 - 479
Target Start/End: Complemental strand, 18651751 - 18651670
Alignment:
Q  398 ttttgttcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgtt 479  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  ||||| |||||| ||||    
T  18651751 ttttgctcattcccaacaaaatagtctaacgtgagttaactcacacatgagtattttgtgttgaaaatgaccaaaaattgtt 18651670  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 489
Target Start/End: Original strand, 10545783 - 10545868
Alignment:
Q  404 tcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 489  Q
    ||||| ||||||||||||| ||  || |||||||| |||||||||||||||||||||| ||||| |||||| |||| ||| |||||    
T  10545783 tcatttccaacaaaatagtataatgtaagttaacttacgcatgagtattttgtgttggaaatgaacaaaaattgttatgagaagag 10545868  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 44340568 - 44340523
Alignment:
Q  102 aaattgacaacaaaatttaataatccatcacgttttattcattaaa 147  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  44340568 aaattgacaacaaaatttaataattcatcacgttttattcattaaa 44340523  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 43846273 - 43846321
Alignment:
Q  398 ttttgttcattcccaacaaaatagtctagcgtgagttaactcacgcatg 446  Q
    ||||||||| ||||   ||||||||| ||||||||||||||||||||||    
T  43846273 ttttgttcactcccgttaaaatagtcgagcgtgagttaactcacgcatg 43846321  T

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Target: scaffold0325 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 397 - 489
Target Start/End: Original strand, 14675 - 14767
Alignment:
Q  397 attttgttcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 489  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||    
T  14675 attttgctcattcccaacaaaatagcctagcgtgagttaactcacgcaggagtattttgtgttgggaatgagcaaaaattgttgtgagaagag 14767  T

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Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 401 - 489
Target Start/End: Complemental strand, 47588158 - 47588070
Alignment:
Q  401 tgttcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 489  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||    
T  47588158 tgttcattcccaataaaatagtttagcgtgagttaactcacgtatgagtattttgtgtcgggaatgtgcaaaaaatgttgtgagaagag 47588070  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 475
Target Start/End: Complemental strand, 33607956 - 33607905
Alignment:
Q  424 tagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaa 475  Q
    |||||| |||||||||||||||||||||||||||||| |||| || ||||||    
T  33607956 tagcgtcagttaactcacgcatgagtattttgtgttgcgaataagaaaaaaa 33607905  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 489
Target Start/End: Original strand, 46866120 - 46866205
Alignment:
Q  404 tcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 489  Q
    |||||||||||||||||   |||||| |||||||||| |||  |||||||||||| || |||||| |||||||  ||||| |||||    
T  46866120 tcattcccaacaaaataacttagcgtaagttaactcatgcagaagtattttgtgtaggaaatgagaaaaaaatactgtgagaagag 46866205  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 33608007 - 33607957
Alignment:
Q  404 tcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtatttt 454  Q
    |||||||||||||||||| ||||| |||||||||| |||||  ||||||||    
T  33608007 tcattcccaacaaaatagcctagcatgagttaacttacgcaaaagtatttt 33607957  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 455
Target Start/End: Original strand, 35720293 - 35720323
Alignment:
Q  425 agcgtgagttaactcacgcatgagtattttg 455  Q
    |||||||||||||||||||||||||||||||    
T  35720293 agcgtgagttaactcacgcatgagtattttg 35720323  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 474
Target Start/End: Original strand, 16862791 - 16862839
Alignment:
Q  426 gcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaa 474  Q
    ||||||||||||||||||| | ||||||  || ||||||||||||||||    
T  16862791 gcgtgagttaactcacgcaggtgtatttcttgatgggaatgagcaaaaa 16862839  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 8005139 - 8005229
Alignment:
Q  185 caaaatattgccaactaaaactaaat-tgtagcacaagaagatggagggaga-ggagggagacggcttgtcatctctctcgtgcaccctca 273  Q
    |||||||||| ||||||||||  ||| |||||||||||||||||||||  || |||||||||  | |||||||||||||||||||||||||    
T  8005139 caaaatattggcaactaaaaccgaatatgtagcacaagaagatggaggtggatggagggagaatgtttgtcatctctctcgtgcaccctca 8005229  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 31218558 - 31218511
Alignment:
Q  78 aatttattaaaaagacataattcaaaattgacaacaaaatttaataat 125  Q
    |||||||||||| |||| |||| ||||||||||| |||||||||||||    
T  31218558 aatttattaaaaggacaaaatttaaaattgacaaaaaaatttaataat 31218511  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 47865960 - 47865899
Alignment:
Q  79 atttattaaaaagacataattcaaaattgacaacaaaatttaataatccatcacgttttatt 140  Q
    ||||||||||| ||| ||||| | ||||||||||||||||||  ||| |||||| |||||||    
T  47865960 atttattaaaatgacgtaatttataattgacaacaaaatttatcaattcatcacattttatt 47865899  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 481
Target Start/End: Complemental strand, 17505408 - 17505352
Alignment:
Q  425 agcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgt 481  Q
    ||||| ||||||||||||||  |||||||  |||| ||||||| |||||||||||||    
T  17505408 agcgtaagttaactcacgcagaagtatttgttgtttggaatgaacaaaaaatgttgt 17505352  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 40186485 - 40186432
Alignment:
Q  183 tacaaaatattgccaactaaaactaaa-ttgtagcacaagaagatggagggaga 235  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  40186485 tacaaaatattggcaactaaaattaaacttgtagcacaagaagatggagggaga 40186432  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 41932231 - 41932160
Alignment:
Q  78 aatttattaaaaagacataattcaaaattgacaacaaaatttaataatccatcacgttttattcattaaaat 149  Q
    |||||||||||| ||||||||| |||||||||||||||| |||||||  || ||| ||||||| ||| ||||    
T  41932231 aatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaat 41932160  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 13387340 - 13387396
Alignment:
Q  398 ttttgttcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtatttt 454  Q
    |||| |||||||||  |||||||||| |||||||||||||||||| ||| |||||||    
T  13387340 ttttcttcattcccgtcaaaatagtcaagcgtgagttaactcacgtatgtgtatttt 13387396  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 455
Target Start/End: Original strand, 34233612 - 34233641
Alignment:
Q  426 gcgtgagttaactcacgcatgagtattttg 455  Q
    ||||||||||||||||||||||||||||||    
T  34233612 gcgtgagttaactcacgcatgagtattttg 34233641  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 44540743 - 44540791
Alignment:
Q  427 cgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaa 475  Q
    |||||||||||||||||||| ||||||  ||  ||||||||||||||||    
T  44540743 cgtgagttaactcacgcatgtgtatttcttggcgggaatgagcaaaaaa 44540791  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 452
Target Start/End: Original strand, 22677810 - 22677858
Alignment:
Q  404 tcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtatt 452  Q
    |||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  22677810 tcattcccaacaaaatagcctagcgcgagttaactcacgcaagagtatt 22677858  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 24814783 - 24814724
Alignment:
Q  81 ttattaaaaagacataattcaaaattgacaacaaaatttaataatccatcacgttttatt 140  Q
    |||||||||||| |||||| |||| ||||||||||||||||||||  ||||| |||||||    
T  24814783 ttattaaaaagatataatttaaaactgacaacaaaatttaataatttatcacattttatt 24814724  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 34001515 - 34001463
Alignment:
Q  391 tattttattttgttcattcccaacaaaatagtctagcgtgagttaactcacgc 443  Q
    |||||| ||||||||||||| ||||||||||| || ||||||||| |||||||    
T  34001515 tatttttttttgttcattcctaacaaaatagtgtaacgtgagttacctcacgc 34001463  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 32979609 - 32979664
Alignment:
Q  85 taaaaagacataattcaaaattgacaacaaaatttaataatccatcacgttttatt 140  Q
    ||||| ||||||||| |||||| |||||| ||||||||||| |||||| |||||||    
T  32979609 taaaatgacataatttaaaatttacaacataatttaataattcatcacattttatt 32979664  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Original strand, 22677878 - 22677916
Alignment:
Q  451 ttttgtgttgggaatgagcaaaaaatgttgtgaaaagag 489  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  22677878 ttttgtgttgggaatgagcaaaaattgttgtgagaagag 22677916  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 489
Target Start/End: Complemental strand, 7526644 - 7526581
Alignment:
Q  426 gcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 489  Q
    ||||||||||||||| ||  |  |||||||||||||||||||||||||||| |||||| |||||    
T  7526644 gcgtgagttaactcatgctaggctattttgtgttgggaatgagcaaaaaatattgtgagaagag 7526581  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 448
Target Start/End: Original strand, 7526597 - 7526649
Alignment:
Q  398 ttttgttcattcccaaca--aaatagtctagcgtgagttaactcacgcatgag 448  Q
    ||||| ||||||||||||  |||||| ||||| ||||||||||||||||||||    
T  7526597 ttttgctcattcccaacacaaaatagcctagcatgagttaactcacgcatgag 7526649  T

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Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 65202 - 65160
Alignment:
Q  83 attaaaaagacataattcaaaattgacaacaaaatttaataat 125  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  65202 attaaaatgacataatttaaaattgacaacaaaatttaataat 65160  T

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Target: scaffold0045; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 72534 - 72492
Alignment:
Q  83 attaaaaagacataattcaaaattgacaacaaaatttaataat 125  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  72534 attaaaatgacataatttaaaattgacaacaaaatttaataat 72492  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 29152986 - 29152932
Alignment:
Q  78 aatttattaaaaagacataattcaaaattgacaacaaaatttaataatccatcac 132  Q
    |||||||||||| ||||||||| |||||||  |||||||||||||||| ||||||    
T  29152986 aatttattaaaatgacataatttaaaattgtaaacaaaatttaataattcatcac 29152932  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 32521268 - 32521222
Alignment:
Q  101 aaaattgacaacaaaatttaataatccatcacgttttattcattaaa 147  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  32521268 aaaattgacaacaaaatttgataatccatcacgtattattaattaaa 32521222  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 13492494 - 13492436
Alignment:
Q  81 ttattaaaaagacataattcaaaattgacaacaaaatttaataatccatcacgttttatt 140  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||  ||||| |||||||    
T  13492494 ttattaaaatgacataatttaaaattgacaac-aaatttaataatttatcacattttatt 13492436  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 17261151 - 17261060
Alignment:
Q  183 tacaaaatattgccaactaaaactaaatt-gtagcacaagaagatggagggagag-gagggagacggcttgtcatctctctcgtgcaccctc 272  Q
    |||||||  ||| |||||||||||| ||| |||||||||||| |||||| ||| | |||||||| || |||||||| ||||| |||||||||    
T  17261151 tacaaaaagttgacaactaaaactatatttgtagcacaagaatatggagcgagcgagagggagaaggtttgtcatccctctcatgcaccctc 17261060  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 53967247 - 53967205
Alignment:
Q  78 aatttattaaaaagacataattcaaaattgacaacaaaattta 120  Q
    |||||||||||| ||||||||| ||||||| ||||||||||||    
T  53967247 aatttattaaaatgacataatttaaaattgtcaacaaaattta 53967205  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 4427316 - 4427256
Alignment:
Q  198 actaaaactaaatt-gtagcacaagaagatggagggag-aggagggagacggcttgtcatc 256  Q
    |||||||||||||| ||||||||||||| ||||||||| | |||||||| ||||| |||||    
T  4427316 actaaaactaaatttgtagcacaagaaggtggagggagaatgagggagaaggcttctcatc 4427256  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 16962841 - 16962885
Alignment:
Q  398 ttttgttcattcccaacaaaatagtctagcgtgagttaactcacg 442  Q
    |||| |||||||| | |||||||||| ||||||||||||||||||    
T  16962841 ttttattcattcctatcaaaatagtcgagcgtgagttaactcacg 16962885  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 32303647 - 32303687
Alignment:
Q  414 caaaatagtctagcgtgagttaactcacgcatgagtatttt 454  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  32303647 caaaatagtcgagcgtgagttaactcacgcatgtgtatttt 32303687  T

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