View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_low_6 (Length: 509)
Name: NF11048_low_6
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_low_6 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Original strand, 26721651 - 26722134
Alignment:
| Q |
18 |
attatagcattattgtgatgaaacgaagtagaaaaaatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcatagacgaaggat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721651 |
attatagcattattgtgatgaaacgaagtagaaaaaatgaaccaaaaggagaggatttcagttagattcacgacgacagaggatttcatagacgaaggat |
26721750 |
T |
|
| Q |
118 |
gaatggtgttgtcgctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacn |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
26721751 |
gaatggtgttgtcgctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaaaaacaaactcact |
26721850 |
T |
|
| Q |
218 |
nnnnnnnnnctcattctcttattacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatg |
317 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
26721851 |
tttttttatctcattctcttcttacttttaatttcattttattctgtaataatgataacgagattgtttctatctacactttataggttctacaaatatg |
26721950 |
T |
|
| Q |
318 |
gttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721951 |
gttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgct |
26722050 |
T |
|
| Q |
418 |
ctcagtactcaaaaacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctc |
501 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722051 |
ctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctc |
26722134 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Complemental strand, 45117259 - 45116788
Alignment:
| Q |
18 |
attatagcattattgtgatgaaacgaagtagaaaaaa-tgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcatagacgaagga |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45117259 |
attatagcattattgtgatgaaacgaggtagaaaaaaatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcatagacgaagga |
45117160 |
T |
|
| Q |
117 |
tgaatggtgttgtcgctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcac |
216 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
45117159 |
tgaaaggtgttgtcgctgccatcctttcaaggaatgtaagaggctcatcactctctttttaagagcatgctcccaaagtgattgggaacatcaaattcac |
45117060 |
T |
|
| Q |
217 |
nnnnnnnnnnctcattctcttattacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatat |
316 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45117059 |
ttttttttatctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatat |
45116960 |
T |
|
| Q |
317 |
ggttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45116959 |
ggttcaaagaagaaaaaccatgagccttggattatg-------------atttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgc |
45116873 |
T |
|
| Q |
417 |
tctcagtactcaaaaacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctc |
501 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45116872 |
tctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctc |
45116788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Original strand, 2987118 - 2987590
Alignment:
| Q |
18 |
attatagcattattgtgatgaaacgaagtagaaaa-aatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcatagacgaagga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2987118 |
attatagcattattgtgatgaaacgaagtagaaaaaaatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcgtagacgaagga |
2987217 |
T |
|
| Q |
117 |
tgaatggtgttgtcgctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcac |
216 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2987218 |
tgaaaggtgttgtcgctgccatcctttcaaggaatgtaagaggcttatcactctctttttaagagcatgttcccaaagtgattgggaacatcaaattcac |
2987317 |
T |
|
| Q |
217 |
-nnnnnnnnnnctcattctcttattacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaata |
315 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2987318 |
tttttttttatctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctatactttataggttctgcaaata |
2987417 |
T |
|
| Q |
316 |
tggttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2987418 |
tggttcaaagaagaaaaaccatgagccttggattatg-------------atttgagaaaatggtttaatactctatttgttgtgtaatttccatcaatg |
2987504 |
T |
|
| Q |
416 |
ctctcagtactcaaaaacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctc |
501 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2987505 |
ttctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctc |
2987590 |
T |
|
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