View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_low_8 (Length: 485)
Name: NF11048_low_8
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 41299520 - 41299277
Alignment:
| Q |
1 |
caagattaattaccatgtaaaagacctttccgatctttgcaacaaaacttcaaaagaaaaacatcaggaggcttttgattctgcaaatcagagcagaaat |
100 |
Q |
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| T |
41299520 |
caagattaattaccatgtaaaagacctttccgatctttgcaacaaaacttcaaaagaaaaacatcaggaggcttttgattctgcaaatcagagcagaaat |
41299421 |
T |
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| Q |
101 |
aagaaaatccagaagcagaagaacaagtaggacaagcagcaattagtcttttcttcaacaaactccaccttgttttttcttttcccaccacccaaaatac |
200 |
Q |
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| T |
41299420 |
aagaaaatccagaagcagaagaacaagtaggacaagcagcaattagtcttttcttcaacaaactccaccttgttttttcttttcccaccacccaaaatac |
41299321 |
T |
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| Q |
201 |
tatataacaccattttccatcagttgaaacatcttcattccacc |
244 |
Q |
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| T |
41299320 |
tatataacaccattttccatcagttgaaacatcttcattccacc |
41299277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 338 - 481
Target Start/End: Complemental strand, 41299183 - 41299040
Alignment:
| Q |
338 |
gaattttgaatatgtattacttacctgctcggagaatggtgagatgaaagaagagaatgatgcgacataaatcagaaccaagaccagttttgtcggggca |
437 |
Q |
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| T |
41299183 |
gaattttgaatatgtattacttacctgctcggagaatggtgagatgaaagaggagaatgatgcgacataaatcagaaccaagaccagttttgtcggggca |
41299084 |
T |
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| Q |
438 |
gttaaccgttatgatggtagtttcaccttctttctctgcttctc |
481 |
Q |
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| T |
41299083 |
gttaaccgttatgatggtagtttcaccttctttctctggttctc |
41299040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 41299258 - 41299222
Alignment:
| Q |
263 |
cattctcagtatctcaaaaggacacagacccggatac |
299 |
Q |
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| T |
41299258 |
cattctcagtatctcaaaaggacacagacccagatac |
41299222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 27664713 - 27664944
Alignment:
| Q |
8 |
aattaccatgtaaaagacctttccgatctttgcaacaaaacttcaaaagaaaaacatcaggaggcttttgattctgcaaatcagagcagaaataagaaaa |
107 |
Q |
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| T |
27664713 |
aattaccgtgtaatagtccttttcgatcatgacagcaaaatttcaaaaggaaaacatcaggaaccttaggtggctgcaaatcagtgcgataatatgatat |
27664812 |
T |
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| Q |
108 |
tccagaagcagaagaacaagtaggacaagcagcaattagtcttttcttcaacaaactccaccttgttttttcttttcccaccacccaaaatactatataa |
207 |
Q |
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| T |
27664813 |
tccagaagctgaggagcaagtaggacatgcttcaaccatcctcttcttcaacaaactccaccttgtcttctgtttcccaaccacccaaaaaactatgtaa |
27664912 |
T |
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| Q |
208 |
caccattttccatcagttgaaacatcttcatt |
239 |
Q |
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| T |
27664913 |
caccactttccatcagttgacacgtcttcatt |
27664944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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