View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11048_low_9 (Length: 479)
Name: NF11048_low_9
Description: NF11048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11048_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 59 - 460
Target Start/End: Complemental strand, 10163642 - 10163239
Alignment:
| Q |
59 |
cttgatctctttcaatggctctatggtttgtggtttttgcaaatatatggatgcacatggataatggagctaattataataggaaaaggaggtgtataga |
158 |
Q |
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| T |
10163642 |
cttgatctctttcaatggctctatggtttgtggtttttgcaaatatatagatgcacatggataatggagctaattataataggaaaaggaggtgtataga |
10163543 |
T |
|
| Q |
159 |
aaggtaaggttggttactttggaagaagggacaagaaattgatgactagaaagcggtaaagcttagattacagaatcaagcaattctgattcattattca |
258 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10163542 |
aaggtaaggttggttactttggaaaaagggacaagaaattgatgactagaaagtggtaaagcttagattacagaatcaagcaattctgattcattattca |
10163443 |
T |
|
| Q |
259 |
tattttacaactcataccaacacatagaccaccaatggccggtggtaacttagcaactaattaacgtctgtacc-nnnnnnnactagtaattaacattta |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
10163442 |
tattttacaactcataccaacacatagaccaccaatggccggtggtaacttagcaactaattaacgtctgtaccttttttttactagtaattaaaattta |
10163343 |
T |
|
| Q |
358 |
tatatataaaatcatt-aaaaaaccaatgtcctttttatttattgtttttatggtcaagtttttcttaggttcaagtgtaagtggcacctatgaatggtg |
456 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10163342 |
tatatataaaatcattaaaaaaaccaatgtcctttttatttattgtttttatggtcaagtttttcttaggttcaagtgtaaatggcacctatgaatggtg |
10163243 |
T |
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| Q |
457 |
gatg |
460 |
Q |
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|||| |
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| T |
10163242 |
gatg |
10163239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10163691 - 10163658
Alignment:
| Q |
1 |
actggcccccaatctgacatcttcactcactctt |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
10163691 |
actggcccccaatctgacatcttcactcactctt |
10163658 |
T |
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