View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11049_high_5 (Length: 355)
Name: NF11049_high_5
Description: NF11049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11049_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 7683406 - 7683730
Alignment:
| Q |
12 |
aagaaacgcacacaactctaatataatttttaaacttacatactttctattggtatcatcgagtgagtacgtgaatcagatcataagcaaaaacataata |
111 |
Q |
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| T |
7683406 |
aagaaatgcacacaactctaatataatttttaaacttacatactttctattggtatcatcgagtgagtacgtgaatcagatcataagcaaaaacataata |
7683505 |
T |
|
| Q |
112 |
cacgcacgcatatattaccatatattgagaaacattaaattttccattgtcatgaagtttatgacacaattataacctaatatatttatagtaactgaag |
211 |
Q |
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| T |
7683506 |
cacgcacgcatatattaccatatattgagaaacattaaattttccattgtcatgaagtttatgacacaattataacctaatatatttatagtaactggag |
7683605 |
T |
|
| Q |
212 |
aagtagtttctgtgcatgtcacgcacatgcttttattttatgacaacagtacacgattgtaaatcgatacagtctcttttgaaatgcaatatctcgttaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7683606 |
aagtagtttctgtgcatgtcacgcacatgcttttattttatgacaacagtacacgattgtaaatcgatacagtctcttttgaaatgcaatatctcgttaa |
7683705 |
T |
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| Q |
312 |
acagcagtcaacttcatagcctctg |
336 |
Q |
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||||||||||||||||||||||||| |
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| T |
7683706 |
acagcagtcaacttcatagcctctg |
7683730 |
T |
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