View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11049_low_1 (Length: 614)
Name: NF11049_low_1
Description: NF11049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11049_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 20 - 594
Target Start/End: Complemental strand, 31039362 - 31038786
Alignment:
| Q |
20 |
cacaccaat-tttttggttt-gcttattgttatgtgtataatatgaggttgatatctcccacctctgcaacttcaactttcaacttagttatggtgaatg |
117 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||| |
|
|
| T |
31039362 |
cacaccaatctttttggttttgcttattgttatgtctataatatgaggttgatatctcctacctctaccacttcaactttcaacttagttatggtgcatg |
31039263 |
T |
|
| Q |
118 |
tattcaacttcttgcactctagtgtgtattggtcaatttttattgtgtacaagagacttaaggttaatggaaaggatagagaaatcaaaattaggaatag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039262 |
tattcaacttcttgcactctagtgtgtattggtcaatttttattgtgtacaagagacttaaggttaatggaaaggatagagaaatcaaaattaggaatag |
31039163 |
T |
|
| Q |
218 |
attaggaggaaataaatggtagttatagcaatgttgcaaggtgacttatataaggtggaaaaatgtctcgtatgttctatggtggatcattgctttaaaa |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
31039162 |
attaggaggaaataaatggtagctatagcaatgttgcaaggtgacttatatagggtggaaaaatgtctcgtatggtctatggtggatcgttgctttaaaa |
31039063 |
T |
|
| Q |
318 |
tagtttgaataacaaccgacgtcggttccttgtaagtaacaattcataatattacttgtcctcggaatcgagagagtgactcaatcacaactagttcggc |
417 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31039062 |
tagtttgaagaacaaccgatgtcggttccttgtaagtaacaattcataatattacttgtcctcggaaccgagagagtgactcaatcacaactagttcggc |
31038963 |
T |
|
| Q |
418 |
agaatcaacggtcacaaccataaggacgtggaggatcttaaacttctacttaattaaatgtgacgatgatcatttgttgtcgaaattttaaacgagtttc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31038962 |
agaatcaacggtcacaaccataaggacgtggaggatcttaaacttctacttaattaaatgtgacgatgatcatttgttgtcgaaattttaaacgagtttc |
31038863 |
T |
|
| Q |
518 |
aaatgtcggtcaactttagactttgtggaacacttttcccactcaagctgttgccttgctccaaatttaccagtttg |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31038862 |
aaatgtcggtcaactttagactttgtggaacacttttcccactcaagctgttgccttgctgcaaatttaccagtttg |
31038786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 31073406 - 31073103
Alignment:
| Q |
20 |
cacaccaattttttggtttgcttattgttatgtgtataatatgaggttgatatctcccacctctgcaacttcaactttcaacttagttatggtgaatgta |
119 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||| |||||||| ||||||||||| || |||| |||||||| ||| |
|
|
| T |
31073406 |
cacaccaatgttttggtttgcatattgttatatcaataatatgaggttgatatctcctacctctgccacttcaactttgaatttagctatggtgattgtt |
31073307 |
T |
|
| Q |
120 |
ttcaacttcttgcactctagtgtgtattggtcaatttttattgtgtacaagagacttaaggttaatggaaaggatagagaaatcaaaattaggaatagat |
219 |
Q |
| |
|
| || |||||| ||||| |||||||||||| || ||||||||||||||||||||||| |||||| ||| ||| ||| ||||||||||||||||| |
|
|
| T |
31073306 |
tgcaccttcttctactcttttgtgtattggtcgtttcttattgtgtacaagagacttaagagtaatggtaagaataaggaactcaaaattaggaatagaa |
31073207 |
T |
|
| Q |
220 |
taggaggaaataaatggtagttatagcaatgttgcaaggtgacttatataaggtggaaaaatgtctcgtatgttctatggtggatcattgctttaaaata |
319 |
Q |
| |
|
||| ||||||||| |||||||||| ||| ||||| |||| ||| ||| ||||| ||||| || |||| ||||| ||||||| ||||| |||||| |
|
|
| T |
31073206 |
tagtaggaaataagtggtagttatggcattgttgtaaggcgac---gatagtgtggagaaatgcttcatatgaactatgatggatcaatgcttgaaaata |
31073110 |
T |
|
| Q |
320 |
gtttgaa |
326 |
Q |
| |
|
||||||| |
|
|
| T |
31073109 |
gtttgaa |
31073103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University