View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11049_low_2 (Length: 469)
Name: NF11049_low_2
Description: NF11049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11049_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 3456393 - 3455960
Alignment:
| Q |
19 |
catcaggtatattacagtgagtattgtgtttatttcttctttacctgacattacttgcaaaaaatcttggtgtatagcatgacatataattcaatacttc |
118 |
Q |
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| T |
3456393 |
catcaggtatattacagtgagtattgtgtttatttcttctttacctgatattacttgcaaaaaaacttggtgtatggcttgtcatataattcaaaacttc |
3456294 |
T |
|
| Q |
119 |
catgtcatgtgtaatagttaaattatatattttctattgaagttttagttgattcatcattttggatgcgaaatgtgtttttgcaaatgttatgaatttt |
218 |
Q |
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||||| ||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |
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| T |
3456293 |
catgttatgtgtaatggttaaattatatatcttctatttaagttttagttgattcatcattttggatgctaaatttgtttttgcaaatgtaatgaatttt |
3456194 |
T |
|
| Q |
219 |
tcaatctaaaaggccgactcagtgtcgtaaactggaccgtagtatttaaagatgagttgtaagttgaaaccctaagtagctactctgcagtgagagacga |
318 |
Q |
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||||| | ||||||||||||||||| ||||| |||||| ||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||| |
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| T |
3456193 |
tcaattttaaaggccgactcagtgttgtaaagtggaccatagtatttaaacatgagttgtaatttgaaaacctaagtagctactctgcagtcagagacga |
3456094 |
T |
|
| Q |
319 |
aaggactatttgtcttaactt--tgatcaaatatcgtannnnnnnnnnnnnnnnnnnncgtatctattttcatttgaaccaggatttctgttttaacatt |
416 |
Q |
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|||||||| ||| || ||||| |||||||||||| || |||||||||||| |||||||||||||||||||||||||||| |
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| T |
3456093 |
aaggacta-ttggctgaactttgtgatcaaatatcatatgttttttgtttgtgtttttcgtatctatttttgtttgaaccaggatttctgttttaacatt |
3455995 |
T |
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| Q |
417 |
ctgattatctcttccaggacaaagagttgcgctat |
451 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3455994 |
ctgattatctcttccaggacaaagagttgcgctat |
3455960 |
T |
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