View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11049_low_3 (Length: 359)
Name: NF11049_low_3
Description: NF11049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11049_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 39658933 - 39659247
Alignment:
| Q |
17 |
agaatttaaattaatccctctcatgatcatcaaattcaaaagagagatataatataattataatataatgtcttggcagcctctccaggaggaggcattg |
116 |
Q |
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| T |
39658933 |
agaatttaaattaattcctctcatgatcatcaaattcaaaagagagatataatataattataatataatgtcttggcagcctctccaggaggaggcattg |
39659032 |
T |
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| Q |
117 |
tagattatctcctggaacaaaaaatcataaaattcaaatatatgtctttacatattgtattctaaggtgttcaaatgttttataatttgtaacatatttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39659033 |
tagattatctcctggaacaaaaaatcataaaattcaaatatatgtctttacatattgtattctaaggtgttcaaatgttttataatttgtagcatatttt |
39659132 |
T |
|
| Q |
217 |
tacaaattctttgtaacattatacatagaaaaaagattagnnnnnnntgggagacatatcgccagagagaaaagcaggttgtggattaatgacaacagta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39659133 |
tacaaattctttgtaacattatacatagaaaaaagattagaaaaaaatgggagacatttcgccagagagaaaagcaggttgtggattaatgacaacagta |
39659232 |
T |
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| Q |
317 |
tttggaagacggtcg |
331 |
Q |
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||||||||||||||| |
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| T |
39659233 |
tttggaagacggtcg |
39659247 |
T |
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