View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11049_low_4 (Length: 358)

Name: NF11049_low_4
Description: NF11049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11049_low_4
NF11049_low_4
[»] chr7 (1 HSPs)
chr7 (41-354)||(24100521-24100833)
[»] chr5 (2 HSPs)
chr5 (115-221)||(5213376-5213483)
chr5 (195-251)||(18812028-18812084)
[»] chr3 (2 HSPs)
chr3 (114-251)||(254378-254516)
chr3 (262-349)||(47531213-47531300)
[»] chr8 (2 HSPs)
chr8 (262-346)||(39285253-39285336)
chr8 (155-247)||(32873718-32873811)
[»] chr2 (1 HSPs)
chr2 (183-250)||(5922605-5922672)
[»] chr6 (1 HSPs)
chr6 (128-207)||(31346273-31346353)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 41 - 354
Target Start/End: Original strand, 24100521 - 24100833
Alignment:
Q  41 ggtttgtcccaatacaagttgccaaaacannnnnnnnaaaataattaatcaacaaatatttttgaaccataagaaacaacatcatcatcaaaagtagcac 140  Q
    ||||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24100521 ggtttgtcccaatacaagtcgccaaaacattttttttaaaataattaatcaacaaatatttttgaaccataagaaacaacatcatcatcaaaagcagcac 24100620  T
Q  141 aatcttataaacaaatcaaaagtagtaagaatattatgttacaaattaattaaca-tttgtattctatccgaccaaaataaacggtgtatcaattaaaga 239  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24100621 aatcttataaacaaatcaaaagtagtaggaatattatgttacaaattaattaacattttgtattctatccgaccaaaataaacggtgtatcaattaaaga 24100720  T
Q  240 gcacaatcgtcaacagtttacaacagtgtgagactgagttgcagaagcgacgacatgagattgagtcagatgaggtgaggagcgacggcgtgtgaagtga 339  Q
    |||||||||||||| ||||||||||  |||||| ||||||| |||||||||||||||||||||||||||| |||||||||| || |||| ||||||||||    
T  24100721 gcacaatcgtcaacggtttacaaca--gtgagattgagttggagaagcgacgacatgagattgagtcagaggaggtgaggaacggcggcatgtgaagtga 24100818  T
Q  340 accctaggttaatat 354  Q
    | |||||||||||||    
T  24100819 atcctaggttaatat 24100833  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 5213483 - 5213376
Alignment:
Q  115 aacaacatcatcatcaaaagtagcacaatcttataaacaaatcaaaagtagtaagaatattatgttacaaattaattaaca-tttgtattctatccgacc 213  Q
    ||||||| ||| ||||||||||||||||||||| |||| |||||||||||||   || ||||||||| ||||||||||| | ||||||||| |   ||||    
T  5213483 aacaacaacataatcaaaagtagcacaatcttacaaactaatcaaaagtagttgtaacattatgttataaattaattaatagtttgtattcaacatgacc 5213384  T
Q  214 aaaataaa 221  Q
    ||||||||    
T  5213383 aaaataaa 5213376  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 18812028 - 18812084
Alignment:
Q  195 atttgtattctatccgaccaaaataaacggtgtatcaattaaagagcacaatcgtca 251  Q
    |||| ||||||||  ||||||||||||||| |||| |||||||||| ||||||||||    
T  18812028 atttatattctatatgaccaaaataaacggggtataaattaaagagtacaatcgtca 18812084  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 251
Target Start/End: Original strand, 254378 - 254516
Alignment:
Q  114 aaacaacatcatcatcaaaagtagcacaatcttataaacaaatcaaaagtagtaagaatattatgttacaaattaattaac-atttgtattctatccgac 212  Q
    |||||||| ||| ||||||||||||| | ||||| |||| |||||||| |||||  || ||| |||||||||||| ||||| |||||||||||||  ||     
T  254378 aaacaacaacataatcaaaagtagcatagtcttacaaactaatcaaaaatagtagcaacattgtgttacaaattagttaacaatttgtattctatttgat 254477  T
Q  213 caaaataaacggtgtatcaattaaagagcacaatcgtca 251  Q
    ||||||||| | || || ||||||| || |||| |||||    
T  254478 caaaataaatgatgcataaattaaatagtacaaacgtca 254516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 47531300 - 47531213
Alignment:
Q  262 acagtgtgagactgagttgcagaagcgacgacatgagattgagtcagatgaggtgaggagcgacggcgtgtgaagtgaaccctaggtt 349  Q
    ||||||| || ||| ||||  ||||||||| ||||||||||| ||||| |||||| |||| ||||| |||  ||||||||| ||||||    
T  47531300 acagtgtaaggctgggttggtgaagcgacgccatgagattgaatcagaggaggtgcggagggacggtgtgcaaagtgaaccttaggtt 47531213  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 346
Target Start/End: Complemental strand, 39285336 - 39285253
Alignment:
Q  262 acagtgtgagactgagttgcagaagcgacgacatgagattgagtcagatgaggtgaggagcgacggcgtgtgaagtgaaccctag 346  Q
    |||||||||| ||| |||| |||||||||||||||| | | ||| ||||||| ||| ||| | || |||||||||||||||||||    
T  39285336 acagtgtgagtctgggttgaagaagcgacgacatga-aataagttagatgagatgatgagtggcgacgtgtgaagtgaaccctag 39285253  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 32873718 - 32873811
Alignment:
Q  155 atcaaaagtagtaagaatattatgttacaaattaattaaca-tttgtattctatccgaccaaaataaacggtgtatcaattaaagagcacaatc 247  Q
    |||||||||||||  || | | ||||||||||||||||| | ||||||||||||  ||| |||||||| |||| ||  ||||||||| ||||||    
T  32873718 atcaaaagtagtagcaacactttgttacaaattaattaatagtttgtattctataggacaaaaataaatggtgcatagattaaagagtacaatc 32873811  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 5922605 - 5922672
Alignment:
Q  183 aaattaattaaca-tttgtattctatccgaccaaaataaacggtgtatcaattaaagagcacaatcgtc 250  Q
    ||||||||||||| ||||||||||||   |||||||||||||||| || |||||||||| |||||||||    
T  5922605 aaattaattaacagtttgtattctatataaccaaaataaacggtg-ataaattaaagagtacaatcgtc 5922672  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 31346273 - 31346353
Alignment:
Q  128 tcaaaagtagcacaatcttataaacaaatcaaaagtagtaagaatattatgttacaaattaattaac-atttgtattctat 207  Q
    ||||||||| |||| ||||| |||| |||||||| |||||  || |||||||||||| |||| |||| |||| ||||||||    
T  31346273 tcaaaagtatcacattcttacaaactaatcaaaactagtagcaaaattatgttacaagttaaataacaatttctattctat 31346353  T

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