View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11049_low_7 (Length: 290)
Name: NF11049_low_7
Description: NF11049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11049_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 24100827 - 24101105
Alignment:
| Q |
1 |
ttaatatatgaaatagaaaataagtattgtggaagtgaaagagtcgtgtgtgtgagagaaataaagtatgagagagagag--------tatgtaaaataa |
92 |
Q |
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| T |
24100827 |
ttaatatttgaaatagaaaatgagtattgtggaagtgaaagagtcgtgtgtgtgtgcgagatagagtatgagagagagagagggagattatgtaaaataa |
24100926 |
T |
|
| Q |
93 |
tattaaaaaatcgattatcctcaaattaaattgagacgagatcgaaaatttgatggataactcaaacccaatctttatttaagttatgtctatggcatgc |
192 |
Q |
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| T |
24100927 |
tattaaaaaaccggttatccttaaattaaattgaaacgagaccgaaaatttgaaggataactcaaacccaatctttatttaagttatgtctatggcatgc |
24101026 |
T |
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| Q |
193 |
cctgtaacttttgtttatgttgataatgaacccgatccttgtctttgccatcacaaatttgcccttatataaccttgatt |
272 |
Q |
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| T |
24101027 |
cctgtaacttttgtttatgttgataatgaacccgatccttgtc-ttgccatcacaaatttgcccttatataaccttgatt |
24101105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 24243566 - 24243520
Alignment:
| Q |
78 |
gagtatgtaaaataatattaaaaaatcgattatcctcaaattaaatt |
124 |
Q |
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| T |
24243566 |
gagtatgtaaaataatattaaaaaatcatttatcctcaaatgaaatt |
24243520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 18790443 - 18790490
Alignment:
| Q |
10 |
gaaatagaaaataagtattgtggaagtgaaagagtcgtgtgtgtgaga |
57 |
Q |
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| T |
18790443 |
gaaatagaaaatgagtattgtggaagtgaaagagtagtttgtgagaga |
18790490 |
T |
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