View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_high_17 (Length: 472)
Name: NF1104_high_17
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 66 - 433
Target Start/End: Original strand, 11741698 - 11742064
Alignment:
| Q |
66 |
tcatttcactcttctgttttacaaagaaacatgctaataataaatgtgaattgtttcactctatggtatgaattgttttactaagaaacatgctagaaat |
165 |
Q |
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| T |
11741698 |
tcatttcactcttctgttttacaaagaaacatgctaataataaatgtgaattgtttcactctatggtatgaattgttttactaagaaacatgctagaaat |
11741797 |
T |
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| Q |
166 |
aaatgtgaattgtatcactatctcttaacccttttaatttcagttgtttgcttgattcaattaggggtttagaattatttttctaaaacctaannnnnnn |
265 |
Q |
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| T |
11741798 |
aaatgtgaattgtatcactatctcttaacccttttaatttcagttgtttgcttgattcaattaggggtttagaattatttttctaaaacctaa-tttttt |
11741896 |
T |
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| Q |
266 |
atggatatgataaaaccccaattaagggttaaatcgtacgaaagattaaacttcatcaaataggtactaagagtccatattttttctcacctaattgaat |
365 |
Q |
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| T |
11741897 |
atagatttgataaaaccccaattaagggttaaatcgtacgaaagattaaacttcatcaaataggtactaagagtccatattttttctcacctaattgaat |
11741996 |
T |
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| Q |
366 |
aagttgttgcnnnnnnnnacttaaatgttaataattcaacttagtcttaatctaggttttcacaggtt |
433 |
Q |
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| T |
11741997 |
aagttgttgtttttttttacttaaatgttaataattcaacttagtcttaatctaggttttcacaggtt |
11742064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 28102729 - 28102685
Alignment:
| Q |
183 |
ctatctcttaacccttttaatttcagttgtttgcttgattcaatt |
227 |
Q |
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| T |
28102729 |
ctatcccttaactcttttaatttcaattgtttgattgattcaatt |
28102685 |
T |
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