View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1104_high_20 (Length: 441)

Name: NF1104_high_20
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1104_high_20
NF1104_high_20
[»] chr8 (1 HSPs)
chr8 (30-433)||(7402574-7402975)
[»] chr4 (2 HSPs)
chr4 (307-352)||(42576947-42576992)
chr4 (303-344)||(45033322-45033363)
[»] chr7 (2 HSPs)
chr7 (305-346)||(10248839-10248880)
chr7 (307-352)||(19989109-19989154)
[»] chr2 (2 HSPs)
chr2 (307-352)||(12457018-12457063)
chr2 (307-347)||(9154170-9154210)
[»] chr1 (1 HSPs)
chr1 (307-352)||(6380151-6380196)
[»] scaffold0001 (1 HSPs)
scaffold0001 (308-352)||(504621-504665)
[»] chr5 (1 HSPs)
chr5 (304-352)||(30264580-30264628)
[»] chr3 (1 HSPs)
chr3 (307-355)||(25353856-25353904)


Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 30 - 433
Target Start/End: Original strand, 7402574 - 7402975
Alignment:
Q  30 atttctctcacacatttacacacattgtgtatgtatacataataaactttaagtagtaacaaattgtgt-agtttgagtagaaatcaagttttttatgag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7402574 atttctctcacacatttacacacattgtgtatgtatacataataaactttaagtagtaacaaattgtgttagtttgagtagaaatcaagttttttatgag 7402673  T
Q  129 agtcttgtgtccaattaagttgtgtaacgaatatttatcattgtcatgaaagtggttgatacttcacacctattacaagtaacaaaaacaaattaacttg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  7402674 agtcttgtgtccaattaagttgtgtaacgaatatttatcattgtcatgaaagtggttgatacttcacacctattacaagtaacaaaaacaaa---acttg 7402770  T
Q  229 ttttattaagtagttttattttattattgaaaatttccatattattctttcttgtttagtcacatgtttgatgtaaattactccctccgtttctatatct 328  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  7402771 ttttaataaatagttttattttattattgaaaatttccatattattctttcttgtttagtcacatgtttgatgcaaattactccctccgtctctatatct 7402870  T
Q  329 aagcaccattttattagagacaaacggagggagtaattgtcaannnnnnnncttcgtttttacatcggattttccaccttgttattgacaattgctacct 428  Q
    ||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7402871 aagcatcattttattagagacaaacggagggagtaattgtcaattgtttttcttcgtttttacatcgaattttccaccttgttattgacaattgctacct 7402970  T
Q  429 ttgtt 433  Q
    |||||    
T  7402971 ttgtt 7402975  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 42576992 - 42576947
Alignment:
Q  307 tactccctccgtttctatatctaagcaccattttattagagacaaa 352  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  42576992 tactccctccgttcctatatctaagcaccattttattagaggcaaa 42576947  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 45033322 - 45033363
Alignment:
Q  303 aaattactccctccgtttctatatctaagcaccattttatta 344  Q
    |||||| | ||||||| |||||||||||||||||||||||||    
T  45033322 aaattatttcctccgtctctatatctaagcaccattttatta 45033363  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 10248880 - 10248839
Alignment:
Q  305 attactccctccgtttctatatctaagcaccattttattaga 346  Q
    ||||||| |||||| |||||||||||||||| ||||||||||    
T  10248880 attactctctccgtctctatatctaagcacccttttattaga 10248839  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 19989154 - 19989109
Alignment:
Q  307 tactccctccgtttctatatctaagcaccattttattagagacaaa 352  Q
    |||| |||||||  ||||||||||||||||||||||||||| ||||    
T  19989154 tacttcctccgtccctatatctaagcaccattttattagaggcaaa 19989109  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 12457018 - 12457063
Alignment:
Q  307 tactccctccgtttctatatctaagcaccattttattagagacaaa 352  Q
    ||||||||||||  ||||||||||||||| ||||||||||| ||||    
T  12457018 tactccctccgtccctatatctaagcacccttttattagaggcaaa 12457063  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 9154210 - 9154170
Alignment:
Q  307 tactccctccgtttctatatctaagcaccattttattagag 347  Q
    ||||||||||||  ||||||||||||||| |||||||||||    
T  9154210 tactccctccgtccctatatctaagcacccttttattagag 9154170  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 6380151 - 6380196
Alignment:
Q  307 tactccctccgtttctatatctaagcaccattttattagagacaaa 352  Q
    |||||||||| |  ||||||||||||||| ||||||||||||||||    
T  6380151 tactccctccatccctatatctaagcacccttttattagagacaaa 6380196  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 504665 - 504621
Alignment:
Q  308 actccctccgtttctatatctaagcaccattttattagagacaaa 352  Q
    |||||||||||  |||||| |||||||| ||||||||||||||||    
T  504665 actccctccgtccctatatgtaagcacctttttattagagacaaa 504621  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 30264628 - 30264580
Alignment:
Q  304 aattactccctccgtttctatatctaagcaccattttattagagacaaa 352  Q
    |||||||||||||||  ||||||||||||||  ||||||||||| ||||    
T  30264628 aattactccctccgtccctatatctaagcactcttttattagaggcaaa 30264580  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 25353856 - 25353904
Alignment:
Q  307 tactccctccgtttctatatctaagcaccattttattagagacaaacgg 355  Q
    |||||||| | | ||||||| |||||||| |||||||||||||||||||    
T  25353856 tactcccttcatctctatatataagcacccttttattagagacaaacgg 25353904  T

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