View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_high_21 (Length: 439)
Name: NF1104_high_21
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 323
Target Start/End: Original strand, 31757936 - 31758264
Alignment:
| Q |
8 |
ccaacaatatcaaaagtaaaagtaaattgaattatgggaactgataaaaccgtccaaatagtgatacatagcttcattgaaaaaagccaaagaattggtg |
107 |
Q |
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| T |
31757936 |
ccaacaatgtcaaaagtaaaagtaaattgaattatgggaactgataaaaccgtccaaatagtgatacatagcttcattgaaaaaagccaaacagttggtg |
31758035 |
T |
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| Q |
108 |
gtggtttgatttctacaagcatccatccaacaacgatgtgttgtttgacaacttggaaccttctttacttgtgttttgattgattgattataaattaagc |
207 |
Q |
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| T |
31758036 |
gtggtttcgtttctacaagcatccatccaacaacgatgtgttgtttgacaacttggaaccttctttacttgtgttttgattgattgattataaattaagc |
31758135 |
T |
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| Q |
208 |
aaagatttgtcagacaaaaccttatttaatt---------------------tatgcttaaacaaccatcttagtctcttgatatgtgataagttttgtt |
286 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31758136 |
aaagatttgtcaaacaaaaccttatttaattctaatatatgtctaaaaataatatgcttaaacaaccatcttagtctcttgatatgtgataagttttgtt |
31758235 |
T |
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| Q |
287 |
gataatcttttaatgtattaaaattgtaatcacataa |
323 |
Q |
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|| ||||||||||||||||||||||||||| |
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| T |
31758236 |
ga--------taatgtattaaaattgtaatcacataa |
31758264 |
T |
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