View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_high_28 (Length: 386)
Name: NF1104_high_28
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 30 - 377
Target Start/End: Original strand, 29448579 - 29448926
Alignment:
| Q |
30 |
gtattcgttgataagtaggcagacacaaaagcgtagcgagtggcctgacaacagcggtaaactagcaaaaaagacggtagcatttaaacaagttttggac |
129 |
Q |
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| T |
29448579 |
gtattcgttgataagtaggcagacacaaaagcgtagcgagtggcctgacaacagcggtaaactagcaaaatagacggtagcatttaaacaagttttggac |
29448678 |
T |
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| Q |
130 |
ttcgtaaaattgtattttgcaccaatatttcaatgcataatagacaagtacactttgctttcacagacgcgggcacaattggtcaaagtctgcgatgaag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29448679 |
ttcgtaaaattgtattttgcaccaatatttcaatgcataatagacaagtacactttgctttcacagacgcgggcacaattggtcaaagtctgcgatcaag |
29448778 |
T |
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| Q |
230 |
cgttgtgttcttgagcatttattcatactttagaaccgaattttctattctaacattattattgaaaaattagggactaaaactgaactaacccttttga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29448779 |
cgttgtgttcttgagcatttattcatactttagaaccgaattttctattctaacattattattgaaaaattagggactaaaactgaactaacccttttga |
29448878 |
T |
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| Q |
330 |
tgttttctcatgtgtccaccaatggcctgtattgaagactatattatt |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29448879 |
tgttttctcatgtgtccaccaatggcctgtattgaagactataatatt |
29448926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 14586329 - 14586372
Alignment:
| Q |
328 |
gatgttttctcatgtgtccaccaatggcctgtattgaagactat |
371 |
Q |
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||||||||||| || ||||||||||| ||||||||||||||||| |
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| T |
14586329 |
gatgttttctcgtgggtccaccaatgccctgtattgaagactat |
14586372 |
T |
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