View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1104_high_32 (Length: 376)

Name: NF1104_high_32
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1104_high_32
NF1104_high_32
[»] chr4 (2 HSPs)
chr4 (95-287)||(49928507-49928703)
chr4 (327-368)||(49928740-49928781)
[»] chr2 (1 HSPs)
chr2 (205-282)||(13696049-13696126)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 95 - 287
Target Start/End: Original strand, 49928507 - 49928703
Alignment:
Q  95 acttggtaggtttaactggttttactattatgttaaattaaatctgcattatctctatatcatgaattatgatgagttttttatattaattttgttgg-- 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  49928507 acttggtaggtttaactggttttactattatgttaaattaaatctgcattatctctatatcatgaattatgatgagttttttatattaattttgttggtt 49928606  T
Q  193 --nnnnnnnnctgtagccttacaacttcatccagataagaacaaacatccaaaagctgaaattgccttcaaacttgtttctgaggttagttttgtca 287  Q
              || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49928607 ttttttttttctctagccttacaacttcatccagataagaacaaacatccaaaagctgaaattgccttcaaacttgtttctgaggttagttttgtca 49928703  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 368
Target Start/End: Original strand, 49928740 - 49928781
Alignment:
Q  327 caagtattgtaacaatggtacaaaatctcatttccctatgct 368  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  49928740 caagtattgtaacaatggtacaaaatctcatttccctctgct 49928781  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 13696126 - 13696049
Alignment:
Q  205 agccttacaacttcatccagataagaacaaacatccaaaagctgaaattgccttcaaacttgtttctgaggttagttt 282  Q
    |||||| |||||||||||||||||||| |||||||| || ||||||||||| ||||| ||||| ||||||||||||||    
T  13696126 agccttgcaacttcatccagataagaataaacatcccaaggctgaaattgcattcaagcttgtctctgaggttagttt 13696049  T

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