View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_high_35 (Length: 369)
Name: NF1104_high_35
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 28 - 359
Target Start/End: Original strand, 39075248 - 39075577
Alignment:
| Q |
28 |
atttgtcccttcatatggctgactattttatagtgtgaaccatgtttctgatgtccaatcatgcgtgtgagggggtgtgttaagaatcctatattggaag |
127 |
Q |
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| T |
39075248 |
atttgtcccttcatatggctgactattttatagtgtgaaccatttttccgatgtccaatcatgcgtgtgagggggtgtattaagagtcctgtattggaag |
39075347 |
T |
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| Q |
128 |
tgatttggtatgaataaatgtttataagttgaggtaatctttacctcacatgcccgttttataaggttgagttacacccaaccataaattattttcatgt |
227 |
Q |
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| T |
39075348 |
tgatttggtatgaataaatgtttataagttgaggtaatttttacctcacatgccagttttataaggttgatttacacccaaccataaattattttcatgt |
39075447 |
T |
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| Q |
228 |
tttgtctaacacgtcgttggagaaagaatatgcttacaaaattatatcacaatgagcacaaacatcgactcaacaaacacgtcnnnnnnnnnnnnnaaga |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
39075448 |
tttgtctaacacgtcgttggagaaagaatatgcttacaaaattatatcacaatgagcacaaacatcgactgaacaaacacgtc--tttttttttttaaga |
39075545 |
T |
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| Q |
328 |
aaattgagttagagactataacccgtttatct |
359 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
39075546 |
aaattgagttagagactataaccagtttatct |
39075577 |
T |
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