View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_high_52 (Length: 287)
Name: NF1104_high_52
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 29517347 - 29517463
Alignment:
| Q |
71 |
aacattgtagaataaggaggaattaaaataaatacctgtgggacattcttccatatgtaaaatgtgaacatcttcaagaagtctgtttgaaattgcatta |
170 |
Q |
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| T |
29517347 |
aacattgtagaataaggaggaattaaaataaatacctgtgggacattcttccatatgtaaaatgtgaacatcttcaagaagtctgtttgaaattgcatta |
29517446 |
T |
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| Q |
171 |
ttgtgttagactcagac |
187 |
Q |
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| T |
29517447 |
ttgtgttagactcagac |
29517463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 29517497 - 29517552
Alignment:
| Q |
220 |
tctaactgtatttctttgtttgaactgttgttaataatttgtacggttttgagaat |
275 |
Q |
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| T |
29517497 |
tctaactgtatttctttgtttgaactgttgttaataatttgtacggttttgagaat |
29517552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 29517253 - 29517285
Alignment:
| Q |
29 |
agtaactttattagaatcaagattttaaataac |
61 |
Q |
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| T |
29517253 |
agtaacttgattagaatcaagattttaaataac |
29517285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 40103584 - 40103529
Alignment:
| Q |
100 |
aaatacctgtgggacattcttccatatgtaaaatgtgaacatcttcaagaagtctg |
155 |
Q |
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| T |
40103584 |
aaatgcctgtgggacgttcttccatatgtaaaagctgaagatcttcaacaagtctg |
40103529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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