View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_high_58 (Length: 269)
Name: NF1104_high_58
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_high_58 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 31137701 - 31137498
Alignment:
| Q |
20 |
atgtattttgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttccctcattggtagaaccagaaaacaaaattacaatcttc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31137701 |
atgtattttgcaatcacaatgctcctcctcctattaacatacatatctataaactttatttccctcattggtagaaccaaaaaacaaaattacaatcttc |
31137602 |
T |
|
| Q |
120 |
caccaggaccttcacctcttgcaattatgctaaacatttttgaattaggnnnnnnnccacaacaatcattagccaaattctcaaaaatatatggtccaat |
219 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31137601 |
caccaggaccttcacctcttgcaattatgctaaacgtttttgaattaggaaaaaaaccacaacaatcattagccaaattctcaaaaatatatggtccaat |
31137502 |
T |
|
| Q |
220 |
aatg |
223 |
Q |
| |
|
|||| |
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|
| T |
31137501 |
aatg |
31137498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 31151337 - 31151541
Alignment:
| Q |
20 |
atgtattttgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttccctcattggtagaaccagaaaacaaaattacaatcttc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
31151337 |
atgtattttgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttcactcattggtagaaccaaaaaacaaaattacaatcttc |
31151436 |
T |
|
| Q |
120 |
caccaggaccttcacctcttgcaattatgctaaacatttttgaa-ttaggnnnnnnnccacaacaatcattagccaaattctcaaaaatatatggtccaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31151437 |
caccaggaccttcacctcttgcaattatgctaaacgtttttgaacttggaaaaaaaaccacaacaatcattagccaaattctcaaaaatatatggtccaa |
31151536 |
T |
|
| Q |
219 |
taatg |
223 |
Q |
| |
|
||||| |
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|
| T |
31151537 |
taatg |
31151541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 31129488 - 31129694
Alignment:
| Q |
17 |
aatatgtattttgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttccctcattggtagaaccagaaaacaaaattacaatc |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |||| ||| | |||||||| ||| ||||| || |||| |
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| T |
31129488 |
aatatgtattttgcaaccacaatgctcctcctcacattagcatacatatctataaactttttttcactccattctagaaccaaaaaccaaaactataatc |
31129587 |
T |
|
| Q |
117 |
ttccaccaggaccttcacctcttgcaattatgctaaacatttttgaattaggnnnnnnnccacaacaatcattagccaaattctcaaaaatatatggtcc |
216 |
Q |
| |
|
|||||||||||||||||| | || |||| ||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||| ||||||| |
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|
| T |
31129588 |
ttccaccaggaccttcacgttttacaataatgctaaacgtttttgaattaggaaaaaaaccacaatattcattagccaaattctcaaaaatacatggtcc |
31129687 |
T |
|
| Q |
217 |
aataatg |
223 |
Q |
| |
|
||||||| |
|
|
| T |
31129688 |
aataatg |
31129694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 24469074 - 24468871
Alignment:
| Q |
20 |
atgtattttgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttccctcattggtagaaccagaaaacaaaattacaatcttc |
119 |
Q |
| |
|
||||||||||||| |||||||||| | ||| | ||||||||||| ||||||| ||| |||| |||||||||||||||| ||||||||| |||||||||| |
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|
| T |
24469074 |
atgtattttgcaaccacaatgctcattctctttttaacatacatttctataagcttaatttcactcattggtagaaccaaaaaacaaaagtacaatcttc |
24468975 |
T |
|
| Q |
120 |
caccaggaccttcacctcttgcaattatgctaaacatttttgaattaggnnnnnnnccacaacaatcattagccaaattctcaaaaatatatggtccaat |
219 |
Q |
| |
|
||||||| ||||||| |||| |||||||| ||| ||||||||||||| |||||| | ||||||||||||||||| ||||||||||| ||||| |
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|
| T |
24468974 |
caccaggtccttcacttcttacaattatgagaaatgtttttgaattaggaaaaaaaccacaatactcattagccaaattctccaaaatatatggcccaat |
24468875 |
T |
|
| Q |
220 |
aatg |
223 |
Q |
| |
|
|||| |
|
|
| T |
24468874 |
aatg |
24468871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 24490329 - 24490126
Alignment:
| Q |
20 |
atgtattttgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttccctcattggtagaaccagaaaacaaaattacaatcttc |
119 |
Q |
| |
|
||||||||||||| |||||||||| | || | ||||||||||| |||||| ||| ||||| |||||| |||||||| ||||||||| |||||||||| |
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|
| T |
24490329 |
atgtattttgcaaccacaatgctcattctatttttaacatacattgctataagcttactttcactcattcttagaaccaaaaaacaaaagtacaatcttc |
24490230 |
T |
|
| Q |
120 |
caccaggaccttcacctcttgcaattatgctaaacatttttgaattaggnnnnnnnccacaacaatcattagccaaattctcaaaaatatatggtccaat |
219 |
Q |
| |
|
||||||| |||||||||||| ||||||| | ||| ||||||||||||| |||||| | ||||||||||||||||| ||||||||||| ||||| |
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| T |
24490229 |
caccaggtccttcacctcttacaattatacgaaatgtttttgaattaggaaaaaatccacaatactcattagccaaattctccaaaatatatggcccaat |
24490130 |
T |
|
| Q |
220 |
aatg |
223 |
Q |
| |
|
|||| |
|
|
| T |
24490129 |
aatg |
24490126 |
T |
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