View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_high_66 (Length: 265)
Name: NF1104_high_66
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_high_66 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 2531620 - 2531809
Alignment:
| Q |
48 |
ttagtgtgtttggaacagatgtgaatatttcataaacgcatgtctagctagattgtgcannnnnnngcttctttaaatccagattaaacttgcataagga |
147 |
Q |
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| T |
2531620 |
ttagtgtgtttggaacagatgtaaatttttcataaacgcacgtttaactagattctgtactttttggcttctttaaatccagattaaacttacataagga |
2531719 |
T |
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| Q |
148 |
agggagagtatgttgccaaacatccatccaaacattatattaacgtatttaatctatattatgaatcaaatacattaatttttgtcggtt |
237 |
Q |
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| T |
2531720 |
atggagagtatgttgccaaacgtccatccaaacattatattaacgtatttaatctatattatgaatcaaatacattaatttttgtcggtt |
2531809 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 24097997 - 24098039
Alignment:
| Q |
187 |
ttaacgtatttaatctatattatgaatcaaatacattaatttt |
229 |
Q |
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| T |
24097997 |
ttaatgtatttaatctatattatgaatcaaatacatcaatttt |
24098039 |
T |
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