View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_high_75 (Length: 252)
Name: NF1104_high_75
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_high_75 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 45218034 - 45217793
Alignment:
| Q |
1 |
ctgtttcgatacagaaccgtccatgtcgatgaactcatcatcggaatcaaatcatggtaatgaattagagccaagggttttctcatgcaactattgccaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45218034 |
ctgtttcgatacagaaccgtccatgtcgatgaattcatcatcggaatcaaatcatggtaatgaattagagccaaggattttctcatgcaactattgccaa |
45217935 |
T |
|
| Q |
101 |
agaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaaaagagaaagaactatggcaaaaagaggaaacaaatctgcggtttcgctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217934 |
agaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaaaagagaaagaactatggcaaaaagaggaaacaaatctgcggtttcgctag |
45217835 |
T |
|
| Q |
201 |
attttgaacacaggtactcaagtatggcttctctacctttgc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217834 |
attttgaacacaggtactcaagtatggcttctctacctttgc |
45217793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 687173 - 687073
Alignment:
| Q |
77 |
gttttctcatgcaactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaaaagagaaagaactatggcaaaaagag |
176 |
Q |
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| T |
687173 |
gttttttcatgcaactactgccaaagaaagttttatagttctcaagcacttggaggacaccaaaatgcacacaagcgcgaaagaactttggcgagaagag |
687074 |
T |
|
| Q |
177 |
g |
177 |
Q |
| |
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| |
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|
| T |
687073 |
g |
687073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 704540 - 704440
Alignment:
| Q |
77 |
gttttctcatgcaactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaaaagagaaagaactatggcaaaaagag |
176 |
Q |
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| T |
704540 |
gttttttcatgcaactactgccaaagaaagttttatagttctcaagcacttggaggacaccaaaatgcacacaagcgcgaaagaactttggcgagaagag |
704441 |
T |
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| Q |
177 |
g |
177 |
Q |
| |
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| |
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| T |
704440 |
g |
704440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 53465301 - 53465371
Alignment:
| Q |
80 |
ttctcatgcaactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaa |
150 |
Q |
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| T |
53465301 |
ttctcatgcaactattgtcaaagaaagttttatagctctcaagctttgggaggacaccaaaatgctcacaa |
53465371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 33032649 - 33032544
Alignment:
| Q |
71 |
ccaagggttttctcatgcaactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaaaagagaaagaactatggcaa |
170 |
Q |
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||||| |||||||||||||| || || || |||||||||| ||||| || || ||||||||||||||||||||||| |||||||||||||| | |||| |
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| T |
33032649 |
ccaagagttttctcatgcaattactgtcagagaaagtttttcagttctcaagctcttggtggacaccaaaatgcacataaaagagaaagaacattagcaa |
33032550 |
T |
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| Q |
171 |
aaagag |
176 |
Q |
| |
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|||||| |
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| T |
33032549 |
aaagag |
33032544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 178
Target Start/End: Complemental strand, 2867206 - 2867117
Alignment:
| Q |
89 |
aactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaaaagagaaagaactatggcaaaaagagga |
178 |
Q |
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| T |
2867206 |
aactattgtcatagaaaattctatagctcacaagcattaggtggacaccaaaatgctcacaaaagagagagatcaatagcaaaaagagga |
2867117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 29335361 - 29335318
Alignment:
| Q |
119 |
caggcacttggtggacaccaaaatgcacacaaaagagaaagaac |
162 |
Q |
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|||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
29335361 |
caggcacttggtggtcatcaaaatgcacacaagagagaaagaac |
29335318 |
T |
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