View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_1 (Length: 887)
Name: NF1104_low_1
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 55 - 658
Target Start/End: Original strand, 41062759 - 41063360
Alignment:
| Q |
55 |
ctctttgcatctcatcggtggctgcaagaaggtcccttgcatgatcttctattgagacaattggtgaaataaattccaccaggatgaatacaacaaataa |
154 |
Q |
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| T |
41062759 |
ctctttgcatctcatcggtggctgcaagaaggtcccttgcatgatcttctattgagacaattggtgaaataaattccaccaggatgaatacaacaaataa |
41062858 |
T |
|
| Q |
155 |
taagctcataattttcatgactcagttttttctgcaagttgtttgatttctcttctcctatataggttggttttatcatgcaaatgttattaaggatttt |
254 |
Q |
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| T |
41062859 |
taagctcataattttcatgactcagttttttctgcaagttgtttgatttctcttctcctggataggttggttttatcatgcaaatgttattaaggatttt |
41062958 |
T |
|
| Q |
255 |
gataattacaacaagaaagtgttattttggtgagaacatgcaaatgtggttctttaccaactatgcc--cacacttcacgaatgattaataaactaacac |
352 |
Q |
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| T |
41062959 |
gataattacaacaagaaggtgttattttcgtgagaacatgcaaatgtggttctttaccaactatgcctacacacttcacgaatgattaataaactaacac |
41063058 |
T |
|
| Q |
353 |
caacttgaggtaattcattcctactagcttaaaaattatacgcacatatacatctaatccattgtaannnnnnnnnnnnnngagagggtccattgtaann |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
41063059 |
caacttgaggtaattcattcctactagcttaaaaattatacgcacatatacatccaatccattgtaa----ttttttttttgagagggtccattgtaatt |
41063154 |
T |
|
| Q |
453 |
nnnnnnaagaggctccaatgtaaatatgttgttgaaaagaaaaaggattgaaaataatatgcgattatattggttctttttatgatttaaattgtgggtt |
552 |
Q |
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|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
41063155 |
ttttttaagagggtccaatgtaaacatgttgttgaagagaaaaaggattgaaaataatatacgattacattggttctttttatgatttaaattgtgggtt |
41063254 |
T |
|
| Q |
553 |
ggattggatcgagtgaccatatcacttagattcacaaacattcgtaaattcgttgatcggccaactcgttgagggggtgaaatgtgatgatagtctcaag |
652 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41063255 |
ggattggatcgagtgaccatatcacttagattcacaaacactcgtaaattcgttgatcggccaactcgttgagggggtgaaatgtgatgatagtctcaag |
41063354 |
T |
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| Q |
653 |
ccacct |
658 |
Q |
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|||||| |
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| T |
41063355 |
ccacct |
41063360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 653 - 872
Target Start/End: Original strand, 41066904 - 41067123
Alignment:
| Q |
653 |
ccacctacacaaattgatattcttcattttagatggtctttttgcaagggcaaacaaaaatggctgatgtgtaactcttgaaatagttatgatataaaaa |
752 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066904 |
ccacctacacaaattgaagttcctcattttagatggtctttttgcaagggcaaacaaaaatggctgatgtgtaactcttgaaatagttatgatataaaaa |
41067003 |
T |
|
| Q |
753 |
tcaaactgtaaagatcgtaagaccttaatagaggacaaaactctatttaatactaatgcattattagtatatgatttgaactttagacctcttgtttaat |
852 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
41067004 |
tcaaactgtaaagaccgtaagaccttaatagaggacaaaactctatttaataccgatgcattattagtatttgatttgaactttagacctcttgttaaat |
41067103 |
T |
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| Q |
853 |
tggaagagattctttaccat |
872 |
Q |
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|||||||||||||||||||| |
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| T |
41067104 |
tggaagagattctttaccat |
41067123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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