View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_100 (Length: 251)
Name: NF1104_low_100
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_100 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 34623847 - 34624075
Alignment:
| Q |
36 |
tatcaatacttttatggaaattgattaaaaaatataccattttcatatacttttattgtaattgattcaaaaatgtaccatattcatatataaatgaagc |
135 |
Q |
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| T |
34623847 |
tatcaatacttttatggaaattgattaaaaaatataccattttcatatacttttattgtaattcattcaaaaatgtaccatattcatatataaatgaagc |
34623946 |
T |
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| Q |
136 |
agtgcagtacttatctaccagttaggaaaatcaaataa-------------actacttatctagaagtggttttttcacgagtaaattatgaatctaatc |
222 |
Q |
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| T |
34623947 |
agtgcagtacttatctaccagttaggaaaatcaaataaacaaacttacatcactacttatctagaagtggttttttcacgagtaaattatgaatctaatc |
34624046 |
T |
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| Q |
223 |
ctaaccgaccaacaataataactttcata |
251 |
Q |
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| T |
34624047 |
ctaaccgaccaacaataataactttcata |
34624075 |
T |
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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 419535 - 419460
Alignment:
| Q |
176 |
tacttatctagaagtggttttttcacgagtaaattatgaatctaatcctaaccgaccaacaataataactttcata |
251 |
Q |
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| T |
419535 |
tacttatctagaagtggttttttcacgagtaaattataaatctaatcctaaccgaccaacaataataactttcata |
419460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 419581 - 419526
Alignment:
| Q |
97 |
ttgattcaaaaatgtaccatattcatatataaatgaagcagtgcagtacttatcta |
152 |
Q |
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| T |
419581 |
ttgattcaaaaatgtaccatattcatatataaatgaagcagtgcagtacttatcta |
419526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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