View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1104_low_101 (Length: 251)

Name: NF1104_low_101
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1104_low_101
NF1104_low_101
[»] chr4 (24 HSPs)
chr4 (12-244)||(8363273-8363505)
chr4 (12-244)||(26495122-26495354)
chr4 (12-244)||(56156935-56157167)
chr4 (12-244)||(36244651-36244883)
chr4 (54-244)||(52137426-52137616)
chr4 (140-246)||(36243517-36243623)
chr4 (140-244)||(26496321-26496425)
chr4 (140-244)||(56157508-56157612)
chr4 (140-244)||(20620139-20620243)
chr4 (140-244)||(20625516-20625620)
chr4 (34-175)||(44499890-44500031)
chr4 (93-244)||(35348797-35348948)
chr4 (64-243)||(36846496-36846674)
chr4 (67-126)||(41348354-41348413)
chr4 (34-131)||(46795934-46796032)
chr4 (148-250)||(52138815-52138916)
chr4 (34-234)||(669550-669751)
chr4 (139-250)||(40723221-40723333)
chr4 (93-244)||(39056425-39056576)
chr4 (67-131)||(307747-307811)
chr4 (93-176)||(26631184-26631267)
chr4 (75-126)||(44664277-44664328)
chr4 (165-233)||(28590942-28591010)
chr4 (67-131)||(29665516-29665580)
[»] chr3 (14 HSPs)
chr3 (12-244)||(13621842-13622074)
chr3 (12-244)||(49380838-49381070)
chr3 (34-209)||(14744098-14744273)
chr3 (140-244)||(13620920-13621024)
chr3 (147-244)||(49379701-49379798)
chr3 (93-132)||(8372584-8372623)
chr3 (93-139)||(7921611-7921657)
chr3 (93-131)||(43345429-43345467)
chr3 (34-131)||(48253043-48253141)
chr3 (67-135)||(7271533-7271601)
chr3 (67-158)||(10301757-10301848)
chr3 (74-131)||(53809442-53809499)
chr3 (75-127)||(20486122-20486174)
chr3 (140-244)||(37416450-37416554)
[»] scaffold0114 (1 HSPs)
scaffold0114 (12-250)||(38534-38772)
[»] chr7 (25 HSPs)
chr7 (12-250)||(41329354-41329592)
chr7 (34-228)||(35296724-35296918)
chr7 (54-244)||(32653463-32653653)
chr7 (140-244)||(41328219-41328323)
chr7 (140-244)||(39981317-39981421)
chr7 (64-244)||(666726-666906)
chr7 (93-243)||(43442728-43442878)
chr7 (93-244)||(10955845-10955996)
chr7 (93-151)||(26146672-26146730)
chr7 (194-244)||(32653733-32653783)
chr7 (54-127)||(29589196-29589269)
chr7 (34-131)||(28326298-28326396)
chr7 (93-175)||(44376653-44376735)
chr7 (93-175)||(44385520-44385602)
chr7 (34-131)||(41515106-41515204)
chr7 (67-132)||(17288184-17288249)
chr7 (189-244)||(669449-669504)
chr7 (93-128)||(25532257-25532292)
chr7 (34-135)||(43931773-43931876)
chr7 (180-250)||(26146759-26146829)
chr7 (102-152)||(29861588-29861638)
chr7 (54-126)||(3330810-3330882)
chr7 (75-127)||(18670454-18670506)
chr7 (164-244)||(38539671-38539751)
chr7 (74-138)||(45721715-45721779)
[»] chr1 (18 HSPs)
chr1 (7-244)||(14479394-14479631)
chr1 (15-244)||(28051495-28051723)
chr1 (54-244)||(51446769-51446959)
chr1 (140-244)||(14478266-14478370)
chr1 (140-244)||(51445590-51445694)
chr1 (67-230)||(40533543-40533706)
chr1 (74-244)||(12667221-12667391)
chr1 (140-244)||(28050321-28050425)
chr1 (148-230)||(40634711-40634793)
chr1 (93-244)||(48528862-48529013)
chr1 (67-127)||(24516448-24516508)
chr1 (67-127)||(40110594-40110654)
chr1 (67-138)||(26803158-26803229)
chr1 (77-146)||(14429849-14429918)
chr1 (164-244)||(15746802-15746882)
chr1 (75-127)||(33941431-33941483)
chr1 (164-244)||(48527534-48527614)
chr1 (95-131)||(50679791-50679827)
[»] chr2 (18 HSPs)
chr2 (12-244)||(28610022-28610254)
chr2 (34-244)||(4919827-4920037)
chr2 (34-205)||(45699568-45699739)
chr2 (34-230)||(19397544-19397741)
chr2 (144-244)||(4921074-4921174)
chr2 (140-244)||(28611264-28611368)
chr2 (132-243)||(8321247-8321358)
chr2 (142-246)||(19398814-19398918)
chr2 (93-151)||(1147842-1147900)
chr2 (162-221)||(45699523-45699582)
chr2 (164-244)||(2276281-2276361)
chr2 (114-154)||(28544941-28544981)
chr2 (164-244)||(34147136-34147216)
chr2 (67-130)||(3533568-3533631)
chr2 (96-149)||(9474020-9474073)
chr2 (176-233)||(34512825-34512882)
chr2 (74-134)||(16289887-16289947)
chr2 (164-244)||(34148396-34148476)
[»] chr5 (26 HSPs)
chr5 (12-244)||(11796569-11796800)
chr5 (140-244)||(23325912-23326016)
chr5 (140-244)||(23333979-23334083)
chr5 (34-243)||(10736843-10737053)
chr5 (140-244)||(11797545-11797649)
chr5 (96-234)||(10978247-10978385)
chr5 (74-158)||(9219262-9219346)
chr5 (33-131)||(8188107-8188206)
chr5 (93-135)||(1273195-1273237)
chr5 (67-173)||(4124828-4124934)
chr5 (140-210)||(13520794-13520864)
chr5 (140-244)||(41144530-41144634)
chr5 (74-176)||(13519540-13519647)
chr5 (65-127)||(5975870-5975932)
chr5 (93-131)||(15857586-15857624)
chr5 (139-247)||(8521252-8521360)
chr5 (140-244)||(10735763-10735867)
chr5 (95-131)||(18695617-18695653)
chr5 (96-131)||(5384317-5384352)
chr5 (93-135)||(22812354-22812397)
chr5 (164-243)||(32757826-32757905)
chr5 (94-131)||(224559-224596)
chr5 (67-168)||(35047495-35047595)
chr5 (176-244)||(8523794-8523862)
chr5 (95-131)||(21389113-21389149)
chr5 (164-244)||(32759084-32759164)
[»] scaffold0219 (2 HSPs)
scaffold0219 (34-244)||(6895-7105)
scaffold0219 (132-244)||(8194-8306)
[»] chr8 (17 HSPs)
chr8 (54-244)||(9853567-9853757)
chr8 (34-226)||(42793717-42793910)
chr8 (140-244)||(9854891-9854995)
chr8 (94-230)||(38697170-38697306)
chr8 (34-158)||(24191463-24191587)
chr8 (67-158)||(43203219-43203310)
chr8 (34-152)||(45395924-45396042)
chr8 (67-127)||(22621076-22621136)
chr8 (93-176)||(31844436-31844519)
chr8 (164-244)||(38696308-38696388)
chr8 (189-244)||(28291295-28291350)
chr8 (67-138)||(39516439-39516510)
chr8 (93-131)||(16362529-16362567)
chr8 (164-249)||(28291401-28291486)
chr8 (93-130)||(34616245-34616282)
chr8 (93-137)||(36757188-36757232)
chr8 (140-232)||(38697880-38697972)
[»] chr6 (5 HSPs)
chr6 (140-244)||(11722786-11722890)
chr6 (140-214)||(21777496-21777570)
chr6 (98-145)||(138176-138223)
chr6 (98-145)||(146197-146244)
chr6 (34-135)||(18242215-18242317)
[»] scaffold0011 (2 HSPs)
scaffold0011 (164-244)||(128627-128707)
scaffold0011 (164-244)||(127433-127513)
[»] scaffold2071 (1 HSPs)
scaffold2071 (164-244)||(717-797)
[»] scaffold1251 (1 HSPs)
scaffold1251 (164-244)||(1121-1201)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 8363273 - 8363505
Alignment:
Q  12 agagagaagatgatggtgctggaaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaa 111  Q
    |||||||||||||| ||||||||||||||||||  |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  8363273 agagagaagatgatagtgctggaaaaattaggtaccgatggctcattataggtataatggacatgcaatcaaacgacgaatatcatatcaaaaattttaa 8363372  T
Q  112 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactc 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8363373 acattaaaaaactaacggaggggatcaatttgactaacggagcaaaaccaaagggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactc 8363472  T
Q  212 ataattatttaggggaccaaatgtccaattaag 244  Q
    |||||||||||||||||||||||||||||||||    
T  8363473 ataattatttaggggaccaaatgtccaattaag 8363505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 26495354 - 26495122
Alignment:
Q  12 agagagaagatgatggtgctggaaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaa 111  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||  || ||||||||||||| ||||||||||||||||||||||||    
T  26495354 agagagaagatgatagtgctggaaaaattaggtgccgatggctcactataggtataacagacatgcaatcaaacggctaatatcatatcaaaaattttaa 26495255  T
Q  112 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  26495254 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttataggagcaaaatgtaaactc 26495155  T
Q  212 ataattatttaggggaccaaatgtccaattaag 244  Q
    |||||||||||||||||||||| | ||||||||    
T  26495154 ataattatttaggggaccaaatattcaattaag 26495122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 56157167 - 56156935
Alignment:
Q  12 agagagaagatgatggtgctggaaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaa 111  Q
    ||||||||||| || | |||||||||| |||||||||| |||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  56157167 agagagaagataatagcgctggaaaaactaggtgtcgacggctcactataggtataatggacatgcaaccaaacggctaatatcatatcaaaaattttaa 56157068  T
Q  112 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactc 211  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  56157067 acattaaaaaactaacggagggggtcaatttgattgacggagcaaaaccaaggagaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactc 56156968  T
Q  212 ataattatttaggggaccaaatgtccaattaag 244  Q
    |||||||||||||||||||||| ||||||||||    
T  56156967 ataattatttaggggaccaaatatccaattaag 56156935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 36244651 - 36244883
Alignment:
Q  12 agagagaagatgatggtgctggaaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaa 111  Q
    |||||||||||||| | ||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  36244651 agagagaagatgatagagctggaaaaattaggtgccgacggctgactataggtataatggacatgcaatcaaacggctaatatcatatcaaacattttaa 36244750  T
Q  112 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| ||| ||||||||||||||    
T  36244751 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaatcaaggggacaaaaatgtgagttttacaatttatgggatcaaaatgtaaactc 36244850  T
Q  212 ataattatttaggggaccaaatgtccaattaag 244  Q
    |||||||||| ||||||||||| ||||||||||    
T  36244851 ataattattttggggaccaaatatccaattaag 36244883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 244
Target Start/End: Complemental strand, 52137616 - 52137426
Alignment:
Q  54 tcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggag 153  Q
    |||||||| |||||||||| |||||||||||||  ||| ||||||||||||| |||| ||||| ||||||||||||||  ||| |||||||| |||||||    
T  52137616 tcactataagtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgaaaaactaacggagatgatgaatttgaccgacggag 52137517  T
Q  154 caaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
     ||||||||  ||||||||||||  |||||| ||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  52137516 taaaaccaagaggaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatatccaattaag 52137426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 36243623 - 36243517
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||| || ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36243623 tttgactaacagagcaaaactaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 36243524  T
Q  240 ttaagtc 246  Q
    |||||||    
T  36243523 ttaagtc 36243517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 26496321 - 26496425
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    |||||||||||||||||| | ||  |||||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||| |||||||||||||||    
T  26496321 tttgactgacggagcaaacctaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacacataattagttagaggaccaaatgtccaa 26496420  T
Q  240 ttaag 244  Q
    |||||    
T  26496421 ttaag 26496425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 56157508 - 56157612
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||| | ||||||||||||| ||||||||||||||||||||| |||||||   |||||||||||||| ||||||||||||| ||||||||| |||||    
T  56157508 tttgactaatggagcaaaaccaaagggaccaaaatgtgagttttacaatttatgaaaccaaaatgtaaacgcataattatttagaggaccaaatatccaa 56157607  T
Q  240 ttaag 244  Q
    |||||    
T  56157608 ttaag 56157612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 20620243 - 20620139
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||||||||| |||||||||  ||||  || ||||||||||| || |||| |||||||||||||||||||||||||||||| |||||||| ||||||    
T  20620243 tttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaaggtccaa 20620144  T
Q  240 ttaag 244  Q
    |||||    
T  20620143 ttaag 20620139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 20625516 - 20625620
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||||||||| |||||||||  ||||  || ||| ||||||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  20625516 tttgactgacggaccaaaaccaagaggactcaactgtaagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 20625615  T
Q  240 ttaag 244  Q
    |||||    
T  20625616 ttaag 20625620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 44499890 - 44500031
Alignment:
Q  34 aaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 133  Q
    ||||||||||||  || || ||||||||| || |||||| |||||||||||||  ||| |||| |||||||| | || ||||||| |||||||||||| |    
T  44499890 aaaaattaggtgctgacggttcactatagatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatatagacattaacaaactaacggagtg 44499989  T
Q  134 gatcaatttgactgacggagcaaaaccaatgggaccaaaatg 175  Q
    ||||||||||||| |||||||||||   | ||||||||||||    
T  44499990 gatcaatttgactaacggagcaaaagttaagggaccaaaatg 44500031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 35348948 - 35348797
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttat 192  Q
    |||| ||||||||||||| |||||||||| |||||||||||||  || |||||||||| |||||||| |  ||||| |||| ||   ||||| || ||||    
T  35348948 atcaaatcaaaaattttagacattaaaaagctaacggaggggactaaattgactgacgaagcaaaacaagagggactaaaacgttgattttacaagttat 35348849  T
Q  193 aggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
     ||||||||||| ||||    ||||| ||| ||||||||| |||||||||||    
T  35348848 gggaccaaaatgaaaacaacaaattacttaagggaccaaaagtccaattaag 35348797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 243
Target Start/End: Original strand, 36846496 - 36846674
Alignment:
Q  64 tataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaat 163  Q
    ||||||||| ||||||||||| |  ||| |||| |||||||| |||| ||||||||| ||||||||| |||| ||| |||||  |||||||||||| |      
T  36846496 tataatggacatgcaatcaaatggttaaaatcaaatcaaaaaatttagacattaaaa-actaacggaagggaccaaattgacgaacggagcaaaacaaga 36846594  T
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 243  Q
    |||||||||||||   |||||  | |||| ||||||||||| ||||    ||||| ||||||| ||||| ||||||||||    
T  36846595 gggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttagggggccaaaagtccaattaa 36846674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 41348413 - 41348354
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaa 126  Q
    |||||| ||||||||||| || ||| |||||||||||||||||| |||||||||||||||    
T  41348413 aatggacatgcaatcaaatgattaaaatcatatcaaaaattttatacattaaaaaactaa 41348354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 46795934 - 46796032
Alignment:
Q  34 aaaaattaggtgtcgatggctcactat-aggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    |||||||||||| ||| || ||||||| |  || |||||| ||||||||||| |  ||| ||||||||||||| |||| ||||||||||||||||||||    
T  46795934 aaaaattaggtgccgacggttcactattaaatacaatggacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 46796032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 52138815 - 52138916
Alignment:
Q  148 acggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagtca 247  Q
    |||||||||||||||  ||||||||||| | || ||| |||||||  || |||||| ||||| ||||||||||||| ||| |||||||| ||||||| ||    
T  52138815 acggagcaaaaccaagaggaccaaaatggg-gtcttacaatttatgtgatcaaaatataaacgcataattatttagaggatcaaatgtcgaattaagcca 52138913  T
Q  248 ata 250  Q
    |||    
T  52138914 ata 52138916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 234
Target Start/End: Original strand, 669550 - 669751
Alignment:
Q  34 aaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 133  Q
    |||||||| |||  ||||||||||  ||| ||||||||| |||||||||||||  ||| ||| ||| || |  || | ||||||||| | ||| |||| |    
T  669550 aaaaattaagtgatgatggctcaccgtagatataatggacatgcaatcaaacggttaaaatcgtataaatatattcagacattaaaacattaatggagtg 669649  T
Q  134 gatcaatttgactgacgg-agcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaa 232  Q
    || ||||||||||||||| | | | |     |||||||||||||||||||||| | |||| ||||||||||| ||| | | ||||| || ||||||||||    
T  669650 gaccaatttgactgacgggacctataattgagggaccaaaatgtgagttttattaattatgggaccaaaatgaaaattgaaaattaattgggggaccaaa 669749  T
Q  233 tg 234  Q
    ||    
T  669750 tg 669751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 40723333 - 40723221
Alignment:
Q  139 atttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaact-cataattatttaggggaccaaatgtcc 237  Q
    ||||||| |||||||  ||||| | ||||||||||  |||||||||| | |||| ||||||||||| ||| | || ||||| ||||||||||||||| ||    
T  40723333 atttgaccgacggagataaacctaagggaccaaaacatgagttttattagttatgggaccaaaatgaaaattgcaaaattaattaggggaccaaatgacc 40723234  T
Q  238 aattaagtcaata 250  Q
     |||||| |||||    
T  40723233 tattaagccaata 40723221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 39056576 - 39056425
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttat 192  Q
    |||| ||||||||||||| |||||||||| ||||||| ||| |  || |||||| |||||||||||| |  ||||| |||| ||   ||||| || ||||    
T  39056576 atcaaatcaaaaattttagacattaaaaagctaacggtgggaactaaattgactaacggagcaaaacaagagggactaaaacgttgattttacaaattat 39056477  T
Q  193 aggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
      |||||||||| ||||    ||||| ||| ||||||||| |||||||||||    
T  39056476 gagaccaaaatgaaaacaacaaattacttaagggaccaaaagtccaattaag 39056425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 307747 - 307811
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    |||||| ||||||||| | |  ||| ||||||||||||| ||||||||||||||||| |||||||    
T  307747 aatggacatgcaatcatatggttaaaatcatatcaaaaaatttaaacattaaaaaaccaacggag 307811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 26631184 - 26631267
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgt 176  Q
    |||| |||||||| |||| ||||||||  || ||||||||||| ||| |||||| |||||||||||| |  || ||||||||||    
T  26631184 atcaaatcaaaaaatttagacattaaaggacaaacggaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgt 26631267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 44664277 - 44664328
Alignment:
Q  75 tgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaa 126  Q
    ||||||||||||||||  ||||||| |||||| ||| |||||||||||||||    
T  44664277 tgcaatcaaacgactataatcatattaaaaatattatacattaaaaaactaa 44664328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 28590942 - 28591010
Alignment:
Q  165 ggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaat 233  Q
    |||||||||  |||||||||| |||||| ||||||||||| || ||   ||||||||| ||||||||||    
T  28590942 ggaccaaaacatgagttttattatttatgggaccaaaatgaaagctggaaattatttaagggaccaaat 28591010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 29665516 - 29665580
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    |||||| ||||||||||| |  ||| |||| |||||||| |||| ||||||||||| ||||||||    
T  29665516 aatggacatgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaattaacggag 29665580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 13621842 - 13622074
Alignment:
Q  12 agagagaagatgatggtgctggaaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaa 111  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  13621842 agagagaagatgatagtgctggaaaaattaggtgccgatggctcactataggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaa 13621941  T
Q  112 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactc 211  Q
    | |||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13621942 atattaaaaaactaactgaggggatcaatttgactgacgaagcaaaatcaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactc 13622041  T
Q  212 ataattatttaggggaccaaatgtccaattaag 244  Q
    |||||||||||||||||||||||||||||||||    
T  13622042 ataattatttaggggaccaaatgtccaattaag 13622074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 49380838 - 49381070
Alignment:
Q  12 agagagaagatgatggtgctggaaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaa 111  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  49380838 agagagaagatgatagtgctggaaaaattaggtgccgatagctcactataggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaa 49380937  T
Q  112 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||    
T  49380938 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggtaccaaaatatgagttttacaatttataggaccaaaatgtaaactc 49381037  T
Q  212 ataattatttaggggaccaaatgtccaattaag 244  Q
    |||||||||||||||||||||| ||||||||||    
T  49381038 ataattatttaggggaccaaatatccaattaag 49381070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 34 - 209
Target Start/End: Complemental strand, 14744273 - 14744098
Alignment:
Q  34 aaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 133  Q
    ||||||||||||  ||||| |||||||| |||||||||| |||||||||| ||  ||| ||||||||||||| |||| ||||||||||| ||||||||      
T  14744273 aaaaattaggtgctgatggttcactatatgtataatggacatgcaatcaatcggttaaaatcatatcaaaaaatttagacattaaaaaattaacggagat 14744174  T
Q  134 gatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaac 209  Q
    ||||||||||||| |||||||||||||||||  |||||||||||||||||| |||||||  |||||||||||||||    
T  14744173 gatcaatttgactaacggagcaaaaccaatgaaaccaaaatgtgagttttacaatttatgagaccaaaatgtaaac 14744098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 13621024 - 13620920
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||  ||||||||||||||| ||||||||||||| |||||||||||| ||    
T  13621024 tttgactgacggagcaaaaccaagaggaccaaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttagaggaccaaatgtcaaa 13620925  T
Q  240 ttaag 244  Q
    |||||    
T  13620924 ttaag 13620920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 49379798 - 49379701
Alignment:
Q  147 gacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||||||||  | || ||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  49379798 gacggagcaaaaccaagagaactaaaatgtgagttttacaatttatgggaccaaaatataaacgcataattatttagaggaccaaatgtccaattaag 49379701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 8372584 - 8372623
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggagg 132  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  8372584 atcatatcaaaaatattaaacattaaaaaactaacggagg 8372623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 7921611 - 7921657
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaa 139  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||||    
T  7921611 atcatatcaaaaatattagacattaaaaaactaacggagaggatcaa 7921657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 43345467 - 43345429
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  43345467 atcatatcaaaaatattaaacattaaaaaactaacggag 43345429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 48253141 - 48253043
Alignment:
Q  34 aaaaattaggtgtcgatggctcactat-aggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    ||||||||||||| ||  | ||||||| || || |||||| ||||||||||| |  ||| |||| |||||||| |||| ||||||||||||||||||||    
T  48253141 aaaaattaggtgttgacagttcactattagatacaatggacatgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaactaacggag 48253043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 7271533 - 7271601
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggagggga 135  Q
    |||||| ||||||||||| |  ||| || | |||||||| |||| ||||||||||||||||||||||||    
T  7271533 aatggacatgcaatcaaatggttaaaattaaatcaaaaagtttagacattaaaaaactaacggagggga 7271601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 10301757 - 10301848
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaa 158  Q
    |||||| || |||||||| |  ||| |||| |||||||| |||| |||||||||||||||| ||||  | ||| |||||| |||||||||||    
T  10301757 aatggacattcaatcaaatggttaaaatcaaatcaaaaaatttagacattaaaaaactaacagaggacaccaaattgactaacggagcaaaa 10301848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 53809442 - 53809499
Alignment:
Q  74 atgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    ||||||||||| |  ||| || |||||||||| |||| ||||||||||||||||||||    
T  53809442 atgcaatcaaatggttaaaattatatcaaaaaatttagacattaaaaaactaacggag 53809499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 20486174 - 20486122
Alignment:
Q  75 tgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaac 127  Q
    |||||||||| || ||| ||||||| |||| ||||| ||||||||||||||||    
T  20486174 tgcaatcaaatgattaaaatcatattaaaagttttagacattaaaaaactaac 20486122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 37416450 - 37416554
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||| |||||||||||| |  |||||||||||||   |||||| | |||| | ||||||||| ||||    ||||| ||||||||||||| | ||||    
T  37416450 tttgactaacggagcaaaacaagagggaccaaaatgttgattttatgagttatggaaccaaaatgaaaacaacaaattacttaggggaccaaaaggccaa 37416549  T
Q  240 ttaag 244  Q
    |||||    
T  37416550 ttaag 37416554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 38772 - 38534
Alignment:
Q  12 agagagaagatgatggtgctggaaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaa 111  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||    
T  38772 agagagaagatgatagtgctggaaaaattaggtgccgacggctcactataggtataatggacatgcaatcaaacggctaatatcatataaaaaattttaa 38673  T
Q  112 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactc 211  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||| ||||||    
T  38672 tcattaaaaaactaacggaggggatcaatttgactgacggaggaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaaaatggaaactc 38573  T
Q  212 ataattatttaggggaccaaatgtccaattaagtcaata 250  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  38572 ataattatttaggggaccaaatgtccaattaagccaata 38534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 41329354 - 41329592
Alignment:
Q  12 agagagaagatgatggtgctggaaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaa 111  Q
    |||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||  |||||||| |||||||| |||||    
T  41329354 agagagaagatgatagtgctgaaaaaattaggtgccgatggctcactataggtataatggacatgcaatcaaacggttaatatcacatcaaaaaatttaa 41329453  T
Q  112 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactc 211  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41329454 acattaaaaatctaacggaggggatcaatttgactgacggagtaaaatcaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactc 41329553  T
Q  212 ataattatttaggggaccaaatgtccaattaagtcaata 250  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  41329554 ataattatttaggggaccaaatgtccaattaagccaata 41329592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 228
Target Start/End: Original strand, 35296724 - 35296918
Alignment:
Q  34 aaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 133  Q
    ||||||||||||  | ||||||| |||| |||||||||| |||||||||||||  ||| ||||||||||||| |||| ||||||||||| ||||||||      
T  35296724 aaaaattaggtgctggtggctcattatatgtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagacattaaaaaattaacggagat 35296823  T
Q  134 gatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggac 228  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||   |||||||||| ||||    
T  35296824 gatcaatttgactaacggagcaaaaccaagggtaccaaaatgtgagttttacaatttataggaccaaaatgtaaactacaaattatttagaggac 35296918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 244
Target Start/End: Complemental strand, 32653653 - 32653463
Alignment:
Q  54 tcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggag 153  Q
    ||||| ||||||||||||| |||||||||||||  ||| || |||||||||||||||  |||||||||||||||||| |||| || | |||| |||||||    
T  32653653 tcactgtaggtataatggacatgcaatcaaacggttaaaatgatatcaaaaattttagtcattaaaaaactaacggatgggaccattctgaccgacggag 32653554  T
Q  154 caaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||| |||||| |||||||||||||| |||||||  ||||||||||||||| |||||||||||| ||||| |||| ||||||||||    
T  32653553 caaaaccaaggggaccgaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttaagggactaaatatccaattaag 32653463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 41328323 - 41328219
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||| |||| || |||||||||  |||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  41328323 tttgattgactgatcaaaaccaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaa 41328224  T
Q  240 ttaag 244  Q
    |||||    
T  41328223 ttaag 41328219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 39981421 - 39981317
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||||||| |||||||||||  |||||||||||||| ||||| ||||||| |||||||||||||||| || |||||||||| ||| |||||||||||    
T  39981421 tttgactgacgaagcaaaaccaaaaggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaacgcacaattatttagaggatcaaatgtccaa 39981322  T
Q  240 ttaag 244  Q
    |||||    
T  39981321 ttaag 39981317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 244
Target Start/End: Complemental strand, 666906 - 666726
Alignment:
Q  64 tataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaat 163  Q
    |||||| || ||||||| ||| |  ||| |||| |||||||| |||  ||||||||| |||||||||||||| ||| |||||| |||||||||||| |      
T  666906 tataatagacatgcaattaaatggttaaaatcaaatcaaaaaatttcgacattaaaatactaacggaggggaccaaattgactaacggagcaaaacaaga 666807  T
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    |||||| |||| | | |||||| | ||||  || ||||||| ||||| ||||||||||||||||| |||  ||||||||||    
T  666806 gggaccgaaatattaattttatgagttatgagatcaaaatgaaaactgataattatttaggggactaaaaatccaattaag 666726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 243
Target Start/End: Original strand, 43442728 - 43442878
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttat 192  Q
    |||| |||||||| |||| ||||||||| |||||||||||||| ||| |||||| |||||||||||| |  |||||||||||||   |||||  | ||||    
T  43442728 atcaaatcaaaaaatttagacattaaaagactaacggaggggaccaaattgactaacggagcaaaacaagagggaccaaaatgttgattttacgagttat 43442827  T
Q  193 aggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 243  Q
     ||||||| ||| ||||    ||||| ||||||||||||| || |||||||    
T  43442828 gggaccaatatgaaaacaacaaattacttaggggaccaaaagttcaattaa 43442878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 10955996 - 10955845
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttat 192  Q
    |||| ||||||||||||| |||||||||| |||||||||||||  || |||||| |||||||||||| |  ||||| |||| ||   |||||||| ||||    
T  10955996 atcaaatcaaaaattttagacattaaaaatctaacggaggggactaaattgactaacggagcaaaacaagagggactaaaacgttgattttataagttat 10955897  T
Q  193 aggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
     | | ||||||| ||||    ||||| ||| ||||||||| |||||||||||    
T  10955896 ggaatcaaaatgaaaacaacaaattacttaagggaccaaaagtccaattaag 10955845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 26146672 - 26146730
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgg 151  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||    
T  26146672 atcatatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgactaacgg 26146730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 32653733 - 32653783
Alignment:
Q  194 ggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  32653733 ggaccaaaatgtaaatacataattatttaggggaccaaatgtccaattaag 32653783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 29589196 - 29589269
Alignment:
Q  54 tcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaac 127  Q
    ||||||||  ||||||||||||| ||||||| |  ||| |||| ||||||||||||||||||||||||||||||    
T  29589196 tcactataaatataatggatatgaaatcaaatggttaaaatcaaatcaaaaattttaaacattaaaaaactaac 29589269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 28326298 - 28326396
Alignment:
Q  34 aaaaattaggtgtcgatggctcactat-aggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    |||||||||||| ||| || ||||||| |  ||||||||| ||||||||||| |  ||| ||||||| ||||| |||| ||||||||||||||||||||    
T  28326298 aaaaattaggtgccgacggttcactattaaatataatggacatgcaatcaaatggttaaaatcatattaaaaaatttagacattaaaaaactaacggag 28326396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 44376653 - 44376735
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatg 175  Q
    |||| |||||||| |||| |||||||||||||||||||| |||| ||||||||| | |||||||||   | ||||||||||||    
T  44376653 atcaaatcaaaaaatttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatg 44376735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 44385520 - 44385602
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatg 175  Q
    |||| |||||||| |||| |||||||||||||||||||| |||| ||||||||| | |||||||||   | ||||||||||||    
T  44385520 atcaaatcaaaaaatttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatg 44385602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 41515204 - 41515106
Alignment:
Q  34 aaaaattaggtgtcgatggctcactat-aggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    |||||||||||| ||| || ||||||| |  ||||||||| ||||||||||| |  ||| ||||||| ||||| |||| ||||||||||| ||||||||    
T  41515204 aaaaattaggtgccgacggttcactattaaatataatggacatgcaatcaaatggttaaaatcatataaaaaactttagacattaaaaaattaacggag 41515106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 17288184 - 17288249
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggagg 132  Q
    |||||| |||||||||||    ||| ||||||||||||| |||| |||||||||||||||||||||    
T  17288184 aatggacatgcaatcaaatagttaaaatcatatcaaaaaatttagacattaaaaaactaacggagg 17288249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 669449 - 669504
Alignment:
Q  189 ttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    |||| ||||||||||| ||||| ||||||| |||||||||||||  ||||||||||    
T  669449 ttatgggaccaaaatgaaaactgataattacttaggggaccaaaaatccaattaag 669504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Complemental strand, 25532292 - 25532257
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacg 128  Q
    |||||||||||||| |||||||||||||||||||||    
T  25532292 atcatatcaaaaatattaaacattaaaaaactaacg 25532257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 43931773 - 43931876
Alignment:
Q  34 aaaaattaggtgtcgatggctcactatag-gtataatggatat-gcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    |||||||| |||  ||||| ||||||| | ||||||||||| | |||||| || || | | ||||| |||||||| ||| ||||||||||||||||||||    
T  43931773 aaaaattatgtggtgatggttcactattgtgtataatggatcttgcaatcgaatgattcaaatcatttcaaaaatgttagacattaaaaaactaacggag 43931872  T
Q  132 ggga 135  Q
    ||||    
T  43931873 ggga 43931876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 26146759 - 26146829
Alignment:
Q  180 ttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagtcaata 250  Q
    ||||| ||||||||||| ||||||| ||||    ||||| ||||||||||||| ||||||||||| |||||    
T  26146759 ttttaaaatttataggatcaaaatgaaaacaacaaattagttaggggaccaaaagtccaattaagccaata 26146829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 29861638 - 29861588
Alignment:
Q  102 aaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgga 152  Q
    ||||| ||| |||| ||||||||||||||  ||||||||||||||||||||    
T  29861638 aaaatattagacataaaaaaactaacggaatggatcaatttgactgacgga 29861588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 3330882 - 3330810
Alignment:
Q  54 tcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaa 126  Q
    ||||||||| || |||| | |||||||||||||  ||| |||| |||||||| |||| ||||||| |||||||    
T  3330882 tcactatagatacaatgaacatgcaatcaaacggttaaaatcaaatcaaaaaatttagacattaacaaactaa 3330810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 18670454 - 18670506
Alignment:
Q  75 tgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaac 127  Q
    |||||||||||| |||  ||||||| |||||| ||| ||||||||||||||||    
T  18670454 tgcaatcaaacggctataatcatattaaaaatattatacattaaaaaactaac 18670506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 38539751 - 38539671
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||  |||||||||| |||||| ||||||||||| |||||   ||||| ||| |||| |||||| || ||||||    
T  38539751 gggaccaaaacatgagttttattatttatgggaccaaaatgaaaacttgaaattaattaagggatcaaatgacctattaag 38539671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 45721715 - 45721779
Alignment:
Q  74 atgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatca 138  Q
    ||||||||||| |  ||| |||| || ||||| |||| |||||||||||||||||||| ||||||    
T  45721715 atgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggagaggatca 45721779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 14479394 - 14479631
Alignment:
Q  7 ggagcagagagaagatgatggtgctggaaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaat 106  Q
    |||| |||||||||||||| || ||||||||||||||||  || |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||    
T  14479394 ggagaagagagaagatgatagtcctggaaaaattaggtgctgacggctcactataggtataatggacatgcaatcaaacggctaatataatatcaaaaat 14479493  T
Q  107 tttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgta 206  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  14479494 tttaatcattaaaaaactaacggaggggatcaatttgactgatggagcaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaaaatgta 14479593  T
Q  207 aactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14479594 aactcataattatttaggggaccaaatgtccaattaag 14479631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 28051495 - 28051723
Alignment:
Q  15 gagaagatgatggtgctggaaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaaca 114  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  28051495 gagaagatgatagtgctggaaaaattaggtgccgacggctcactataggtataatggacatgcaatcaaacagctaatatcatatcaaaaattttaaaca 28051594  T
Q  115 ttaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcata 214  Q
    |||||||| |||||||  | |||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  28051595 ttaaaaaattaacgga-tgaatcaatttgactaacggagcaaaatcaaggggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcata 28051693  T
Q  215 attatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||| | ||||| ||||||||||    
T  28051694 attatttagggaatcaaatatccaattaag 28051723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 54 - 244
Target Start/End: Original strand, 51446769 - 51446959
Alignment:
Q  54 tcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggag 153  Q
    |||| |||||||||||||| ||||||||||||   ||| ||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||    
T  51446769 tcacaataggtataatggacatgcaatcaaacagttaaaatcatatcaaaaaatttagatattaaaaaactaacggaggggatcaatttgactgacggag 51446868  T
Q  154 caaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||| |||||||||||||| |||||| |||||||  ||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  51446869 caaaaccaaggggaccaaaatgtgggttttacaatttatgtgaccaaaatgtaaatgcataattatttagaggaccaaatgtccaattaag 51446959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 14478370 - 14478266
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||||||||||||||||| |  |||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||||||| |||||||||||||||    
T  14478370 tttgactgacggagcaaaacccagaggaccaaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttagaggaccaaatgtccaa 14478271  T
Q  240 ttaag 244  Q
    |||||    
T  14478270 ttaag 14478266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 51445694 - 51445590
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    |||||||||| || |||||||||  |||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  51445694 tttgactgacagatcaaaaccaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaa 51445595  T
Q  240 ttaag 244  Q
    |||||    
T  51445594 ttaag 51445590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 67 - 230
Target Start/End: Original strand, 40533543 - 40533706
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatggg 166  Q
    |||||| |||||||| || |  ||| |||||||||||| ||||| ||||||||||| |||||||||||| |  ||||||| |||||||||| | |  |||    
T  40533543 aatggacatgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacggaggggacctttttgactaacggagcaaagcgagaggg 40533642  T
Q  167 accaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggacca 230  Q
    ||||||||||  |||||| ||||||| | ||||||||||||||| |||||||||||||||||||    
T  40533643 accaaaatgttggttttacaatttatggaaccaaaatgtaaactgataattatttaggggacca 40533706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 12667221 - 12667391
Alignment:
Q  74 atgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaa 173  Q
    ||||||||||| || ||| |||| |||||||| |||  |||||||||||||||||||||||| ||| |||||| |||||||||||| |  |||||| |||    
T  12667221 atgcaatcaaatgattaaaatcaaatcaaaaaatttcgacattaaaaaactaacggaggggaccaagttgactaacggagcaaaacaagagggaccgaaa 12667320  T
Q  174 tgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||| | |||||  | || ||||||||||||| ||||| |||||||||||| |||| |||  ||||||||||    
T  12667321 tgttaattttacgaattctaggaccaaaatgaaaactgataattatttagaggactaaaaatccaattaag 12667391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 28050425 - 28050321
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||| ||||||||||| ||| ||||||||||||||  ||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||    
T  28050425 tttgactaacggagcaaaatcaaggggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttaagggaccaaatgtctaa 28050326  T
Q  240 ttaag 244  Q
    |||||    
T  28050325 ttaag 28050321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 40634711 - 40634793
Alignment:
Q  148 acggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggacca 230  Q
    ||||||||||| ||| ||||| |||||||||||||||| |||||| ||| |||||||||||||   |||||||||||||||||    
T  40634711 acggagcaaaatcaaggggacgaaaatgtgagttttatgatttatcggatcaaaatgtaaactgcaaattatttaggggacca 40634793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 48528862 - 48529013
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttat 192  Q
    |||| ||||||| ||||| | ||||||||||||||||| |||| ||| |||||| |||||| ||||  |  ||||| |||||||   |||||  | ||||    
T  48528862 atcaaatcaaaagttttagatattaaaaaactaacggatgggaccaaattgactaacggagaaaaataagagggactaaaatgttgattttacgagttat 48528961  T
Q  193 aggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
     ||||||||||||||||    ||||| || |||||||||| |||||||||||    
T  48528962 gggaccaaaatgtaaacaacaaattacttgggggaccaaaagtccaattaag 48529013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 24516508 - 24516448
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaac 127  Q
    |||||| ||||||||||| |  ||| |||||||||| ||||||| ||||||||||||||||    
T  24516508 aatggacatgcaatcaaatggttaaaatcatatcaagaattttatacattaaaaaactaac 24516448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 40110594 - 40110654
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaac 127  Q
    |||||| ||||||||||| |  ||| |||||||||| ||||||| ||||||||||||||||    
T  40110594 aatggacatgcaatcaaatggttaaaatcatatcaataattttatacattaaaaaactaac 40110654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 26803158 - 26803229
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatca 138  Q
    |||||| ||||||||||| |  ||| |||||||||| ||||||| ||||||||| |||||| ||| ||||||    
T  26803158 aatggacatgcaatcaaatggttaaaatcatatcaagaattttatacattaaaatactaacagagaggatca 26803229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 14429918 - 14429849
Alignment:
Q  77 caatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgact 146  Q
    ||||||||||  ||| |||||||||| ||| ||| ||||||||||| |||| |||  |||||||||||||    
T  14429918 caatcaaacggttaaaatcatatcaagaatattagacattaaaaaaataacagagatgatcaatttgact 14429849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 15746802 - 15746882
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||  |||||||||| | |||| ||||||||||| ||| |   ||||| ||||||||||||||| || ||||||    
T  15746802 gggaccaaaacatgagttttattacttatgggaccaaaatgaaaattggaaattaattaggggaccaaatgacctattaag 15746882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 33941483 - 33941431
Alignment:
Q  75 tgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaac 127  Q
    ||||||||||||  ||| ||||||| |||||| ||| ||||||||||||||||    
T  33941483 tgcaatcaaacggttaaaatcatattaaaaatgttagacattaaaaaactaac 33941431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 48527614 - 48527534
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||||| | |||||  | |||| ||||||||||||||||    ||||| |||||||||||||  ||||||||||    
T  48527614 gggaccaaaatgttaattttacgagttatgggaccaaaatgtaaacaacaaattacttaggggaccaaaaatccaattaag 48527534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 50679791 - 50679827
Alignment:
Q  95 catatcaaaaattttaaacattaaaaaactaacggag 131  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  50679791 catatcaaaaaatttagacattaaaaaactaacggag 50679827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 28610254 - 28610022
Alignment:
Q  12 agagagaagatgatggtgctggaaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaa 111  Q
    ||||| |||||||| ||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||    
T  28610254 agagataagatgatagtgctggaaaaattaggtgccgacggctcactataggtataatgaacatgcaatcaaacggctaatatcatatcaaaaattttaa 28610155  T
Q  112 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactc 211  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||||    
T  28610154 acattaaaaaactaacggatgggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactc 28610055  T
Q  212 ataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||||| |||||||||||||||||||    
T  28610054 ataattatttaggtgaccaaatgtccaattaag 28610022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 4920037 - 4919827
Alignment:
Q  34 aaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 133  Q
    ||||||||| ||  ||||| ||||||||||||||||||| |||||||||||||  ||| ||||||||||||| |||| |  |||||||||||| ||||||    
T  4920037 aaaaattagatgctgatggttcactataggtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagatgttaaaaaactaatggaggg 4919938  T
Q  134 gatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaat 233  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||| ||||||  ||||||||||||| |||||||||    
T  4919937 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtggattttataatttatgggaccaaattgtaaatgcataattatttagaggaccaaat 4919838  T
Q  234 gtccaattaag 244  Q
    |||||||||||    
T  4919837 gtccaattaag 4919827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 45699739 - 45699568
Alignment:
Q  34 aaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 133  Q
    ||||||||| ||| || || ||||||||||||| ||||| ||||||||||||   ||| ||||||||||||| |||| | ||||||||||||| ||||||    
T  45699739 aaaaattagatgttgacggttcactataggtatgatggacatgcaatcaaacagttaaaatcatatcaaaaaatttagatattaaaaaactaatggaggg 45699640  T
Q  134 gatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgt 205  Q
    | ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| | ||||||||||    
T  45699639 ggtcaatttgactgacggagcaaaaccaaagggactaaaatgtgagttttacaatttatggaaccaaaatgt 45699568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 19397741 - 19397544
Alignment:
Q  34 aaaaattaggtgtcgatggctcactat-aggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggagg 132  Q
    ||||||||||||||||  | ||||||| |  || |||||| |||||||| || |  ||| || ||||||||| ||||| ||||||||||| ||||||| |    
T  19397741 aaaaattaggtgtcgacagttcactattaattacaatggacatgcaatccaatggttaaaattatatcaaaagttttagacattaaaaaaataacggaag 19397642  T
Q  133 ggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggacca 230  Q
    ||| |  | ||||| |||||||||||| |  ||||||||||||| ||||||| ||||||| |||||||||||||||||  ||||||||||||||||||    
T  19397641 ggacctttatgactaacggagcaaaacgagagggaccaaaatgttagttttaaaatttatgggaccaaaatgtaaactggtaattatttaggggacca 19397544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 4921074 - 4921174
Alignment:
Q  144 actgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 243  Q
    |||||| ||||||||||||  |||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||| |||||||||||||||||||    
T  4921074 actgacagagcaaaaccaagaggaccaaaatgtgagttttacaatttatgggactaaaatgtaaacgcataattatttagaggaccaaatgtccaattaa 4921173  T
Q  244 g 244  Q
    |    
T  4921174 g 4921174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 28611264 - 28611368
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    |||||||||||||||||||||||  |||||||||| ||| ||||| ||||||| |||||||||||||||| ||||||||||||| ||||||||| |||||    
T  28611264 tttgactgacggagcaaaaccaaaaggaccaaaatatgaattttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatatccaa 28611363  T
Q  240 ttaag 244  Q
    |||||    
T  28611364 ttaag 28611368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 8321247 - 8321358
Alignment:
Q  132 gggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaa 231  Q
    |||||||||||||| ||||||||||||  || ||||| |||||||  |||||| ||||||| |||||||||||||||| ||||||||||||| ||| |||    
T  8321247 gggatcaatttgaccgacggagcaaaattaaagggactaaaatgttggttttaaaatttatgggaccaaaatgtaaacgcataattatttagaggatcaa 8321346  T
Q  232 atgtccaattaa 243  Q
    ||||||||||||    
T  8321347 atgtccaattaa 8321358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 19398814 - 19398918
Alignment:
Q  142 tgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaatt 241  Q
    ||||| |||||||||||| |  |||||||||||||  |||||| ||||||| ||||||||||||||||   ||||||||||||| |||||| | ||||||    
T  19398814 tgactaacggagcaaaacaagagggaccaaaatgtaggttttacaatttatgggaccaaaatgtaaaccggtaattatttagggaaccaaaagaccaatt 19398913  T
Q  242 aagtc 246  Q
    |||||    
T  19398914 aagtc 19398918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 1147900 - 1147842
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgg 151  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||    
T  1147900 atcatatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgactaacgg 1147842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 45699582 - 45699523
Alignment:
Q  162 atgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattattt 221  Q
    |||| |||||||||||| ||||| ||||||| |||||||||||||||| |||||||||||    
T  45699582 atggaaccaaaatgtgaattttacaatttatgggaccaaaatgtaaacacataattattt 45699523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 2276361 - 2276281
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||  |||||||||| | ||||||||| |||||| ||||| | ||||||||  ||||||||||| || ||||||    
T  2276361 gggaccaaaacatgagttttattacttataggactaaaatgaaaactgaaaattatttgagggaccaaatgacctattaag 2276281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 28544941 - 28544981
Alignment:
Q  114 attaaaaaactaacggaggggatcaatttgactgacggagc 154  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  28544941 attaaaaaactaacgtagaggatcaatttgactgacggagc 28544981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 34147216 - 34147136
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||  |||||||||| | |||| ||||||||||| ||||| | ||||||||  ||||||||||| || ||||||    
T  34147216 gggaccaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttgagggaccaaatgacctattaag 34147136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 3533568 - 3533631
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacgga 130  Q
    ||||||| ||||||||||||  | | |||||||||||||  ||||||||||||| |||||||||    
T  3533568 aatggatctgcaatcaaacggttgaaatcatatcaaaaaacttaaacattaaaatactaacgga 3533631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 9474020 - 9474073
Alignment:
Q  96 atatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgac 149  Q
    ||||||||||| ||||||||||||||  ||| |||||||| || ||||||||||    
T  9474020 atatcaaaaatattaaacattaaaaatttaatggaggggaccactttgactgac 9474073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 34512882 - 34512825
Alignment:
Q  176 tgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaat 233  Q
    |||||||||| | |||| ||||||||||| |||||  |||||| ||||||||||||||    
T  34512882 tgagttttattaattatgggaccaaaatgaaaactggtaattaattaggggaccaaat 34512825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 16289947 - 16289887
Alignment:
Q  74 atgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggagggg 134  Q
    |||| |||||| || ||| |||| || |||||||||| ||||||||||||||| |||||||    
T  16289947 atgcgatcaaatgagtaaaatcaaataaaaaattttagacattaaaaaactaatggagggg 16289887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 34148396 - 34148476
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||  |||||||||| |||||| | || |||||| ||||| | ||||||||  ||||||||||| || ||||||    
T  34148396 gggaccaaaacatgagttttattatttatggaactaaaatgaaaactgaaaattatttgagggaccaaatgacctattaag 34148476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 11796800 - 11796569
Alignment:
Q  12 agagagaagatgatggtgctggaaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaa 111  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  11796800 agagagaagatgatagtgctggaaaaattagatgccgacggctcactataggtataatggacatgcaatcaaacggctaatatcatatcaaaagttttaa 11796701  T
Q  112 acattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactc 211  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  11796700 acattaaaaaactagcggatgggatcaatttgactgagggagcaaaaccaa-gggaccaaaatatgagttttacaatttatgggaccaaaatgtaaactc 11796602  T
Q  212 ataattatttaggggaccaaatgtccaattaag 244  Q
    |||||||||||||||||||||||||||||||||    
T  11796601 ataattatttaggggaccaaatgtccaattaag 11796569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 23326016 - 23325912
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||||||||| |||||||||  ||||  || ||||||||||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  23326016 tttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 23325917  T
Q  240 ttaag 244  Q
    |||||    
T  23325916 ttaag 23325912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 23333979 - 23334083
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||||||||| |||||||||  ||||  || ||| ||||||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  23333979 tttgactgacggaccaaaaccaagaggactcaactgttagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 23334078  T
Q  240 ttaag 244  Q
    |||||    
T  23334079 ttaag 23334083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 243
Target Start/End: Original strand, 10736843 - 10737053
Alignment:
Q  34 aaaaattaggtgtcgatggctcactat-aggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggagg 132  Q
    |||||||| |||| || || ||||||| || || |||||| || |||||||| |  ||| |||| ||||||||||||| ||||||||||  |||||||||    
T  10736843 aaaaattaagtgttgacggttcactattagatacaatggacattcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagttaacggagg 10736942  T
Q  133 ggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaa 232  Q
    ||| ||| |||| | |||||||||||| |  |||||||||||||   |||||  | |||| ||||||||||| ||||    ||||| |||||||||||||    
T  10736943 ggaccaaattgattaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaagaaattacttaggggaccaaa 10737042  T
Q  233 tgtccaattaa 243  Q
     ||||||||||    
T  10737043 agtccaattaa 10737053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 11797545 - 11797649
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||| |||||| ||||| |  |||||||||||||   |||||  | ||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  11797545 tttgactaacggagaaaaacaagagggaccaaaatgttgattttacgagttatgagaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 11797644  T
Q  240 ttaag 244  Q
    |||||    
T  11797645 ttaag 11797649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 10978247 - 10978385
Alignment:
Q  96 atatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgga-gcaaaaccaatgggaccaaaatgtgagttttataatttatag 194  Q
    ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| | | ||   | |||||| ||| ||| ||||||| ||||||||    
T  10978247 atatcaaaaatattaaacattaaaaatctaacggaggggatcactttgactgacggacgtataattga-gggaccgaaacgtgggttttattatttatag 10978345  T
Q  195 gaccaaaatgtaaactcataattatttaggggaccaaatg 234  Q
    |||||||||| ||| |   ||||| |||||||||||||||    
T  10978346 gaccaaaatgaaaattggaaattaattaggggaccaaatg 10978385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 9219346 - 9219262
Alignment:
Q  74 atgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaa 158  Q
    |||||||||||||  ||| |||| || |||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||    
T  9219346 atgcaatcaaacggttaaaatcaaataaaaaattttagacattaaaaaactaacggaggggatcaaattgactaatggagcaaaa 9219262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 8188107 - 8188206
Alignment:
Q  33 gaaaaattaggtgtcgatggctcactat-aggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    |||||||||||||| ||||| |||| || |  ||||||||| ||||||||||| |  ||| ||||||||| |||||||| ||||||||||||||||||||    
T  8188107 gaaaaattaggtgttgatggttcaccattaaatataatggacatgcaatcaaatggttaaaatcatatcagaaattttagacattaaaaaactaacggag 8188206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 1273237 - 1273195
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggagggga 135  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  1273237 atcatatcaaaaatattaaacattaaaaaactaacggagggga 1273195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 4124934 - 4124828
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatggg 166  Q
    ||||||||| |||||||| |  ||| || | ||||||| |||||||||||||| |||||| | |||||| ||| || ||| |||||||||||| || |||    
T  4124934 aatggatatacaatcaaatggttaaaattaaatcaaaatttttaaacattaaacaactaatgaaggggaccaaattaactaacggagcaaaacaaaaggg 4124835  T
Q  167 accaaaa 173  Q
    |||||||    
T  4124834 accaaaa 4124828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 13520794 - 13520864
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaact 210  Q
    ||||||| |||||||||||||||  ||||||||||||| |||||||||||||| | || ||| ||||||||    
T  13520794 tttgactaacggagcaaaaccaagaggaccaaaatgtgggttttataatttatggaactaaagtgtaaact 13520864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 41144530 - 41144634
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||| ||||||||||| ||| |||||||||| ||   ||||| ||||||| ||||||||||| ||||    ||||| |||||||||||||  |||||    
T  41144530 tttgactaacggagcaaaatcaaagggaccaaaacgttgattttagaatttatgggaccaaaatgaaaacaacaaattaattaggggaccaaaaatccaa 41144629  T
Q  240 ttaag 244  Q
    |||||    
T  41144630 ttaag 41144634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 13519647 - 13519540
Alignment:
Q  74 atgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaa-----cggaggggatcaatttgactgacggagcaaaaccaatgggac 168  Q
    ||||||||||| |  ||| |||||||||||| ||||| |||||||||||||||     |||| ||||||||||||||  |||||||||||| |   ||||    
T  13519647 atgcaatcaaatggttaaaatcatatcaaaagttttagacattaaaaaactaaactaacggaagggatcaatttgacaaacggagcaaaacaagaaggac 13519548  T
Q  169 caaaatgt 176  Q
    ||||||||    
T  13519547 caaaatgt 13519540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 5975932 - 5975870
Alignment:
Q  65 ataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaac 127  Q
    |||||||| ||||||||||| |  ||| ||||||||||||| |||| ||||||||||||||||    
T  5975932 ataatggacatgcaatcaaatggttaaaatcatatcaaaaactttagacattaaaaaactaac 5975870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 15857586 - 15857624
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15857586 atcatatcaaaaatattaaacattaaaaaactaacggag 15857624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 8521360 - 8521252
Alignment:
Q  139 atttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtcca 238  Q
    |||||||||||||||  ||||    ||||||||||  |||||||||| | |||| ||||||||||| |||||   ||||| ||| ||||||||||| ||     
T  8521360 atttgactgacggagacaaacgtgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaattaagggaccaaatgacct 8521261  T
Q  239 attaagtca 247  Q
    |||||||||    
T  8521260 attaagtca 8521252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 10735867 - 10735763
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||| |||||||||||| |  |||||||||| ||   |||||  | |||| ||||||||||| ||||   |||||| ||||||||||||| ||||||    
T  10735867 tttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaagtaattacttaggggaccaaaagtccaa 10735768  T
Q  240 ttaag 244  Q
    |||||    
T  10735767 ttaag 10735763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 18695617 - 18695653
Alignment:
Q  95 catatcaaaaattttaaacattaaaaaactaacggag 131  Q
    |||||||||||||||| ||||||||||||||||||||    
T  18695617 catatcaaaaattttagacattaaaaaactaacggag 18695653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 5384317 - 5384352
Alignment:
Q  96 atatcaaaaattttaaacattaaaaaactaacggag 131  Q
    ||||||||||| ||||||||||||||||||||||||    
T  5384317 atatcaaaaatattaaacattaaaaaactaacggag 5384352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 22812354 - 22812397
Alignment:
Q  93 atcatatcaaaaattttaaacatt-aaaaaactaacggagggga 135  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  22812354 atcatatcaaaaatattaaacattaaaaaaactaacggagggga 22812397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 32757905 - 32757826
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 243  Q
    ||||||||||  |||||||||| |||||| ||||||||||| |||||   ||||||||  ||||||||||| || |||||    
T  32757905 gggaccaaaacatgagttttattatttatgggaccaaaatgaaaactggaaattatttgagggaccaaatgacctattaa 32757826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 224559 - 224596
Alignment:
Q  94 tcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  224559 tcatatcaaaaaatttagacattaaaaaactaacggag 224596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 35047595 - 35047495
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatggg 166  Q
    |||||| |||||||| || || ||| || |||||||||| ||||| |||||||||||||| |||  ||| |  ||||||| |||||||||||| || |||    
T  35047595 aatggacatgcaatcgaatgattaaaattatatcaaaaaatttaagcattaaaaaactaatgga-tggacctttttgactaacggagcaaaacaaaaggg 35047497  T
Q  167 ac 168  Q
    ||    
T  35047496 ac 35047495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 8523794 - 8523862
Alignment:
Q  176 tgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    |||||||||| | |||| ||||||||||| |||||   ||||| ||||||||||||||| || ||||||    
T  8523794 tgagttttattagttatgggaccaaaatgaaaacttgaaattaattaggggaccaaatgacctattaag 8523862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 21389113 - 21389149
Alignment:
Q  95 catatcaaaaattttaaacattaaaaaactaacggag 131  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  21389113 catataaaaaattttagacattaaaaaactaacggag 21389149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 32759084 - 32759164
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||  |||||||||| |||||| | || |||||| ||||| | ||||||||  ||||||||||| || ||||||    
T  32759084 gggaccaaaacatgagttttattatttatggaactaaaatgaaaactgaaaattatttgagggaccaaatgacctattaag 32759164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 7105 - 6895
Alignment:
Q  34 aaaaattaggtgtcgatggctcactat-aggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggagg 132  Q
    ||||||||||||| || || ||||||| |  ||||||||| |||||||||||||  ||| || |||||||||| |||| | ||| |||||||||||||||    
T  7105 aaaaattaggtgttgacggttcactattaaatataatggacatgcaatcaaacggttaaaattatatcaaaaaatttagatattgaaaaactaacggagg 7006  T
Q  133 ggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaa 232  Q
    | ||||||||||| |||||||||||||||| || ||||||||||  |||||| ||||||| |||||||||||||||| ||||||||||||| ||||||||    
T  7005 g-atcaatttgaccgacggagcaaaaccaaaggaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaa 6907  T
Q  233 tgtccaattaag 244  Q
    ||||||||||||    
T  6906 tgtccaattaag 6895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 8194 - 8306
Alignment:
Q  132 gggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaa 231  Q
    |||||||| |||||| |||||| ||||| |  |||||||||||||   |||||  | |||| ||||||||||||||||  | ||||| ||||||||||||    
T  8194 gggatcaaattgactaacggagtaaaacgagagggaccaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattacttaggggaccaa 8293  T
Q  232 atgtccaattaag 244  Q
    | || ||||||||    
T  8294 aagttcaattaag 8306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 244
Target Start/End: Complemental strand, 9853757 - 9853567
Alignment:
Q  54 tcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggag 153  Q
    |||||||||||||||||||||||||||||||||  ||| || |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||    
T  9853757 tcactataggtataatggatatgcaatcaaacggttaaaattatatcaaaaaatttagatattaaaaaactaacggaggggatcaatttgactgacggag 9853658  T
Q  154 caaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||| | | ||||||||| | ||||||| ||||||| |||||||||| |||||  |||||||||||  ||| | ||||| ||||||||    
T  9853657 caaaacccaggagaccaaaatattagttttacaatttatgggaccaaaatataaacatataattatttaaaggagctaatgttcaattaag 9853567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 42793910 - 42793717
Alignment:
Q  34 aaaaattaggtgtcgatggctcactat-aggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggagg 132  Q
    ||||||||||||||||||| ||||||| |  || |||||| |||||||| || |  ||| |||||||||||| ||||| ||||||||||| |||| ||||    
T  42793910 aaaaattaggtgtcgatggttcactattaattacaatggacatgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacagagg 42793811  T
Q  133 ggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttagggg 226  Q
    ||| |  ||||||| |||||||||||| |  ||||||||||||| | ||||| ||||||| |||||||||| ||||||  ||||||||||||||    
T  42793810 ggacctttttgactaacggagcaaaacaagagggaccaaaatgttaattttacaatttatgggaccaaaatataaactggtaattatttagggg 42793717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 9854891 - 9854995
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    ||||||||||||||||||| |||  |||||||||||||  ||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  9854891 tttgactgacggagcaaaatcaagaggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaa 9854990  T
Q  240 ttaag 244  Q
    |||||    
T  9854991 ttaag 9854995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 230
Target Start/End: Complemental strand, 38697306 - 38697170
Alignment:
Q  94 tcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttata 193  Q
    ||||||||||| ||||| ||||||||| | |||||||||||| |  ||||||||| |||||||||  || |||||||||||||  ||||||||||||||     
T  38697306 tcatatcaaaagttttagacattaaaatagtaacggaggggacctttttgactgagggagcaaaataaaagggaccaaaatgttggttttataatttatg 38697207  T
Q  194 ggaccaaaatgtaaactcataattatttaggggacca 230  Q
     |||||||||||||| | ||||||||||| |||||||    
T  38697206 agaccaaaatgtaaattgataattatttaagggacca 38697170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 24191587 - 24191463
Alignment:
Q  34 aaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 133  Q
    ||||||||||||  || || ||||||||| || |||||| |||||||||||||  ||| |||| |||||||| |||| ||||||| |||||||||||| |    
T  24191587 aaaaattaggtgctgacggttcactatagatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatttagacattaacaaactaacggagtg 24191488  T
Q  134 gatcaatttgactgacggagcaaaa 158  Q
    ||||||||||| | || ||||||||    
T  24191487 gatcaatttgagtaacagagcaaaa 24191463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 43203219 - 43203310
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaa 158  Q
    |||||| ||||||||||| |  ||| || | |||||||| |||| |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  43203219 aatggacatgcaatcaaatgtttaaaattaaatcaaaaaatttagacattaaaaaactaacggaggggaccaaattgactgacggagcaaaa 43203310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 45395924 - 45396042
Alignment:
Q  34 aaaaattaggtgtcgatggctcactataggtataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 133  Q
    |||||||||||| |||||| | ||||||  || |||||| |||||||||||||  ||| ||| ||| |||||| | | ||||||| |||||||||||| |    
T  45395924 aaaaattaggtgccgatggtttactatatatacaatggacatgcaatcaaacggttaaaatcgtataaaaaatatcagacattaagaaactaacggagtg 45396023  T
Q  134 gatcaatttgactgacgga 152  Q
    || ||||||||||||||||    
T  45396024 gaccaatttgactgacgga 45396042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 22621076 - 22621136
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaac 127  Q
    |||||| ||||||||||| || ||| |||||||||| ||||||| ||||||||||||||||    
T  22621076 aatggacatgcaatcaaatgattaaaatcatatcaagaattttatacattaaaaaactaac 22621136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 31844519 - 31844436
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaatgggaccaaaatgt 176  Q
    |||| ||||||||||||| | ||||||  || ||||||||||| ||| |||||| |||||||||||| |  |||||||||||||    
T  31844519 atcaaatcaaaaattttagaaattaaaggacaaacggaggggaccaaattgactaacggagcaaaacaagagggaccaaaatgt 31844436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 38696388 - 38696308
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||  |||||||||| | ||||  |||||||||| ||||| | ||||| ||||||||||||||| || ||||||    
T  38696388 gggaccaaaacatgagttttattagttatgagaccaaaatgaaaacttaaaattaattaggggaccaaatggcctattaag 38696308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 28291350 - 28291295
Alignment:
Q  189 ttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    |||| ||||||||||| ||||| ||||||| |||||||||||||  ||||||||||    
T  28291350 ttatgggaccaaaatgaaaactgataattacttaggggaccaaaaatccaattaag 28291295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 39516439 - 39516510
Alignment:
Q  67 aatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatca 138  Q
    |||||| ||||||||||| |  ||| |||| || ||||| |||| |||||||||||||||||||| ||||||    
T  39516439 aatggacatgcaatcaaatggttaaaatcacatgaaaaaatttagacattaaaaaactaacggagaggatca 39516510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 16362567 - 16362529
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggag 131  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  16362567 atcatatcaaaaatattagacattaaaaaactaacggag 16362529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 28291401 - 28291486
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagtcaat 249  Q
    |||||| |||||| | |||||  | |||| |||||||| || ||||| ||||||||||||||||| |||  |||||||||| ||||    
T  28291401 gggaccgaaatgttaattttacgagttatgggaccaaagtgaaaactgataattatttaggggactaaaaatccaattaagccaat 28291486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 34616282 - 34616245
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacgga 130  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  34616282 atcatattaaaaatattaaacattaaaaaactaacgga 34616245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 36757188 - 36757232
Alignment:
Q  93 atcatatcaaaaattttaaacattaaaaaactaacggaggggatc 137  Q
    ||||||||||||| |||| ||||||||||||||| |||| |||||    
T  36757188 atcatatcaaaaaatttagacattaaaaaactaatggagaggatc 36757232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 38697972 - 38697880
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaa 232  Q
    ||||||| |||||||||||| |  |||||||||||||   ||||| || |||| | |||||||||||||   | ||||| |||||||||||||    
T  38697972 tttgactaacggagcaaaacaagagggaccaaaatgttgattttacaagttatggaaccaaaatgtaaatagaaaattacttaggggaccaaa 38697880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 11722890 - 11722786
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 239  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||||||| ||| |||||||||||    
T  11722890 tttgactgacggagcaaaaccaagaggaccaaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttagaggatcaaatgtccaa 11722791  T
Q  240 ttaag 244  Q
    |||||    
T  11722790 ttaag 11722786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 21777496 - 21777570
Alignment:
Q  140 tttgactgacggagcaaaaccaatgggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcata 214  Q
    ||||||||||||| |||||||||  ||||  || ||||||||||| || |||| |||||||||||||||||||||    
T  21777496 tttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcata 21777570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 138176 - 138223
Alignment:
Q  98 atcaaaaattttaaacattaaaaaactaacggaggggatcaatttgac 145  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  138176 atcaaaaagtttagacattaaaaaaataacggaggggatcaatttgac 138223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 146197 - 146244
Alignment:
Q  98 atcaaaaattttaaacattaaaaaactaacggaggggatcaatttgac 145  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  146197 atcaaaaagtttagacattaaaaaaataacggaggggatcaatttgac 146244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 18242215 - 18242317
Alignment:
Q  34 aaaaattaggtgtcgatggctcactatagg-tataatggatatgcaatcaaacgactaatatcatatcaaaaattttaaacattaaaaaactaacggagg 132  Q
    ||||||||||||  ||||| ||||||||   || |||||| ||||||||||| |  ||| || | || |||||||| | |||||||||||||||||||||    
T  18242215 aaaaattaggtgatgatggttcactataaaatacaatggacatgcaatcaaatggttaaaattaaattaaaaatttaagacattaaaaaactaacggagg 18242314  T
Q  133 gga 135  Q
    |||    
T  18242315 gga 18242317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 128627 - 128707
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||  |||||||||| | | |||||||||||||| ||||| | ||||| ||| ||||||||||| || ||||||    
T  128627 gggaccaaaacatgagttttattagtaataggaccaaaatgaaaacttaaaattaattaagggaccaaatgacctattaag 128707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 127513 - 127433
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||  |||||||||| | |||| ||||||||| | |||||   ||||| ||||||||||||||| || ||||||    
T  127513 gggaccaaaacatgagttttattagttatgggaccaaaacgaaaacttgaaattaattaggggaccaaatgacctattaag 127433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 717 - 797
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||  |||||||||| | |||| ||||||||||| |||||   ||||| |||| |||||||||| || ||||||    
T  717 gggaccaaaacatgagttttattagttatgggaccaaaatgaaaactggaaattaattagaggaccaaatgacctattaag 797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 1121 - 1201
Alignment:
Q  164 gggaccaaaatgtgagttttataatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaag 244  Q
    ||||||||||  |||||||||| | |||| ||||||||||| |||||   ||||||||  ||||||||||| || ||||||    
T  1121 gggaccaaaacatgagttttattacttatgggaccaaaatgaaaactggaaattatttgagggaccaaatgacctattaag 1201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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