View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_103 (Length: 251)
Name: NF1104_low_103
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_103 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 54472898 - 54472659
Alignment:
| Q |
9 |
agcagagaacacatatgtttggtaacaaagttataccaattgtgcagttcctttctatcatcgtcatcttaaaagattaggatttaaattgtacaacttg |
108 |
Q |
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| T |
54472898 |
agcagagaacacatatgtttggtaacaaagttataccaattgtgcagttcctttctatcatcgtcatcttaaaagaataggatttaaattgtacaacttg |
54472799 |
T |
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| Q |
109 |
tatttatatattacggttcaggcttcaaacccgcgcccctaatcaccccacgcaacttaccttcgtgtaactgtgttggttcaaaaaggcatgtcactct |
208 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472798 |
tatttatatattacggttcaggcttcaaacccgcgtccctaatcacccctcgcaacttaccttcgtgtaactgtgttggttcaaaaaggcatgtcactct |
54472699 |
T |
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| Q |
209 |
cgcttcgcttaattgactctcccacttattagcattataa |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
54472698 |
cgcttcgcttaattgactctcccacttattagcattataa |
54472659 |
T |
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