View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_104 (Length: 251)
Name: NF1104_low_104
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_104 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 54472506 - 54472273
Alignment:
| Q |
1 |
tcaaatttggatcctctaccgcgtcgactatggcaccatgcaaaagctttagaggatccatttctgatcnnnnnnntaagaataggctatgaatcattaa |
100 |
Q |
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| T |
54472506 |
tcaaatttggatcctctaccgcgtcgactatggcaccatgcaaaagctttagaggatccatttctgatcaaaaaaataagaataggctatgaatcattaa |
54472407 |
T |
|
| Q |
101 |
ttaattaa------------cttcctccattaactattctaaacttcataacatgcttatttgcaaattcctattnnnnnnngaaataggagatatataa |
188 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
54472406 |
ttaattaattaattaattagcttcccccattaactattctaaacttcataacatgcttatttgcaaattcctattaaaaaaagaaataggagatatataa |
54472307 |
T |
|
| Q |
189 |
aaatatataccgtgtgctggagtagggtagtaat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
54472306 |
aaatatataccgtgtgctggagtagggtagtaat |
54472273 |
T |
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