View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_106 (Length: 250)
Name: NF1104_low_106
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_106 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 24159356 - 24159576
Alignment:
| Q |
1 |
cgctattgtttttgtcgctatcttaagcattttcccttaacaaattggcctatacaccatagctgtctaacatttttaacgtaaataaagttttaagtct |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24159356 |
cgctattgttttggtcgctatcttaagcattttcccttaacaaattggcctatacaccatagctgtctaacatttttaacgtaaataaagttt-aagtct |
24159454 |
T |
|
| Q |
101 |
ttcaaaggcttgcctagcttacatgttcaacccctattccaaccacattgttaccacaatatccaccattacacaaattctacattttgagactcatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
24159455 |
ttcaaaggcttgcctagcttacatgttcaacccctattccaaccacattgttaccacaatatccaccattacacaaattctacactttgagactcgtgaa |
24159554 |
T |
|
| Q |
201 |
atttaaatttcacaacccaaat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
24159555 |
atttaaatttcacaacccaaat |
24159576 |
T |
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