View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_107 (Length: 250)
Name: NF1104_low_107
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_107 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 48412658 - 48412525
Alignment:
| Q |
1 |
cttctctttaatggcgcctcagaaactcactgagtacgaacgcaaacgactcgaaaacattcgccgcaacaatgaaatgatggccgctctcaaagttcac |
100 |
Q |
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| T |
48412658 |
cttctctttaatggcgcctcagaaactcactgagtacgaacgcaaacgactcgaaaacattcgccgcaacaatgaaatgatggccgctcttaaagttcac |
48412559 |
T |
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| Q |
101 |
actaaagccaccgaactctccattcgtcccaagt |
134 |
Q |
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| T |
48412558 |
actaaagccaccgaactctccattcttcccaagt |
48412525 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 48420403 - 48420351
Alignment:
| Q |
35 |
tacgaacgcaaacgactcgaaaacattcgccgcaacaatgaaatgatggccgc |
87 |
Q |
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|||||||| || ||||| ||||||||||| |||||||| ||||||||| |||| |
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| T |
48420403 |
tacgaacggaagcgacttgaaaacattcgtcgcaacaaagaaatgatgtccgc |
48420351 |
T |
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