View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_11 (Length: 607)
Name: NF1104_low_11
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 313 - 553
Target Start/End: Original strand, 52824696 - 52824937
Alignment:
| Q |
313 |
agatgtatacactacaggg-tgtacacaaaacgttgatgtagctctagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttc |
411 |
Q |
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| T |
52824696 |
agatgtatacactacaggggtgtacacaaaacgttgatgtagctctagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttc |
52824795 |
T |
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| Q |
412 |
ttcataaatcagtgtaaaatattaaatatttctttcacattttgtaaataagatctttaattgaattaaataactcaacttgattgattaatttttgttt |
511 |
Q |
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| T |
52824796 |
ttcataaatcagtgtaaaatattaaatatgtctttcacattttgtaaataagatctttaattgaattaaataactcaacttgattgattaatttttgttt |
52824895 |
T |
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| Q |
512 |
gcaacttgttaaaaggggtagtacgtcttgttaaatgggatt |
553 |
Q |
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| T |
52824896 |
gcaacttgttaaaaggggtagtacatcttgttaaatgagatt |
52824937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 52824375 - 52824640
Alignment:
| Q |
1 |
cgagagcatgcgtaggatctctgctcctcaagcaccactgtattattctgaaaaaatggataacagatcaaacaccgtcaatttcagcagtagtttgggg |
100 |
Q |
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| T |
52824375 |
cgagagcatgcgtaggatctgtgttcctcaagcaccactgtattattctgaaaaaatggataacagatcaaacaccgtcaatttcagcagcagtttgggg |
52824474 |
T |
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| Q |
101 |
tatttcacagttccacatataacaatccctcccaattaacattgtcacatcttatnnnnnnnnnnnnncaacaatgatatagacatatctttagatttca |
200 |
Q |
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| T |
52824475 |
gatttcacagttccacagataacaatccctcccaattaacattgtcacatcttattatatatatatatcaacaatgatatagacatatctttagatttca |
52824574 |
T |
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| Q |
201 |
tacattcattcaacatctgattttctctctagcactcttcttttcacatcatcaaactatcatatc |
266 |
Q |
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| T |
52824575 |
tacattcattcaacatctgattttctctctagcactcttcttttcacatcatcaaactgtcatatc |
52824640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 553 - 601
Target Start/End: Original strand, 52824960 - 52825008
Alignment:
| Q |
553 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcatctcac |
601 |
Q |
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| T |
52824960 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcatatcac |
52825008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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