View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1104_low_113 (Length: 238)

Name: NF1104_low_113
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1104_low_113
NF1104_low_113
[»] chr6 (13 HSPs)
chr6 (1-165)||(34925393-34925557)
chr6 (11-207)||(34928649-34928845)
chr6 (1-207)||(34929755-34929961)
chr6 (1-111)||(34935295-34935405)
chr6 (158-222)||(34925526-34925590)
chr6 (135-218)||(34928719-34928802)
chr6 (86-165)||(34935410-34935489)
chr6 (86-216)||(34928778-34928914)
chr6 (143-218)||(34925481-34925556)
chr6 (86-165)||(34929894-34929973)
chr6 (158-213)||(34929942-34929997)
chr6 (158-213)||(34935458-34935513)
chr6 (138-207)||(34935408-34935477)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 34925393 - 34925557
Alignment:
Q  1 tttgatgttaccttcagcaacttgtgcttcgcgcttatgaatgtcaatagcttcagctttctgcttacgaatttcagctctctgatttcgaagttcagcg 100  Q
    |||||||||||||||||||||||  |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34925393 tttgatgttaccttcagcaacttcagcttcgcgcttacgaatttcaatagcttcagctttctgcttacgaatttcagctctctgatttcgaagttcagcg 34925492  T
Q  101 gctttctgcttacaaacttcaacagctccctctttctgcttccgaagttcagcagctttctgctt 165  Q
    ||||||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||||||    
T  34925493 gctttctgcttacaaacttcagcagcttcctccttctgctttcgaagttcagcagctttctgctt 34925557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 34928649 - 34928845
Alignment:
Q  11 ccttcagcaacttgtgcttcgcgcttatgaatgtcaatagcttcagctttctgcttacgaatttcagctctctgatttcgaagttcagcggctttctgct 110  Q
    ||||||| |||||  |||||| ||||| |||| |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  34928649 ccttcagaaacttcagcttcgtgcttacgaatttcaacagcttcagctttctgcttacgaacttcagctctctgctttcgaagttcagcggctttctgct 34928748  T
Q  111 tacaaacttcaacagctccctctttctgcttccgaagttcagcagctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagc 207  Q
    ||||||||||| ||||| |||  |||| ||| ||||||||||| |||| ||||||||||| |||||| |||||||||||||| ||| ||||||||||    
T  34928749 tacaaacttcagcagcttcctgcttcttctttcgaagttcagcggcttcctgctttcgaacttcagcggctttctgcttctgttttcgaacttcagc 34928845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 34929755 - 34929961
Alignment:
Q  1 tttgatgttaccttcagcaacttgtgcttcgcgcttatgaatgtcaatagcttcagctttctgcttacgaatttcagctctctgatttcgaagttcagcg 100  Q
    |||||||||||||||||||||||  ||||| |||||| |||| |||| |||||| |||||||||||||||  |||||||||||| ||||||||||||||     
T  34929755 tttgatgttaccttcagcaacttcagcttcacgcttacgaatttcaacagcttcggctttctgcttacgagcttcagctctctgctttcgaagttcagca 34929854  T
Q  101 gctttctgcttacaaacttcaacagctccctctttctgcttccgaagttcagcagctttctgctttcgaagttcagcagctttctgcttctgcttttgaa 200  Q
    ||||||||||| | || |||||| ||| |||  ||  |||| ||||||||||| ||||  ||||| || | ||||||||||  ||||||||||||  |||    
T  34929855 gctttctgctttcgaagttcaacggcttcctgctttagctttcgaagttcagcggcttcttgcttacggacttcagcagctacctgcttctgcttgcgaa 34929954  T
Q  201 cttcagc 207  Q
    |||||||    
T  34929955 cttcagc 34929961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 34935295 - 34935405
Alignment:
Q  1 tttgatgttaccttcagcaacttgtgcttcgcgcttatgaatgtcaatagcttcagctttctgcttacgaatttcagctctctgatttcgaagttcagcg 100  Q
    |||||||||||||||||||||||  ||||| |||||| |||| |||| ||||||||||||||||||||||  |||||||||||| |||||||||||| ||    
T  34935295 tttgatgttaccttcagcaacttcagcttcacgcttacgaatttcaacagcttcagctttctgcttacgagcttcagctctctgctttcgaagttcaacg 34935394  T
Q  101 gctttctgctt 111  Q
    |||| ||||||    
T  34935395 gcttcctgctt 34935405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 34925526 - 34925590
Alignment:
Q  158 ttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcagtttcctgctcttg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34925526 ttctgctttcgaagttcagcagctttctgcttctgcttttgaactttagcagtttcctgctcttg 34925590  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 34928719 - 34928802
Alignment:
Q  135 tctgcttccgaagttcagcagctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcagtttcctgct 218  Q
    ||||||| ||||||||||| ||||||||||| | || ||||||||||| |||||||| |||| ||| |||||| | ||||||||    
T  34928719 tctgctttcgaagttcagcggctttctgcttacaaacttcagcagcttcctgcttcttctttcgaagttcagcggcttcctgct 34928802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 34935410 - 34935489
Alignment:
Q  86 tttcgaagttcagcggctttctgcttacaaacttcaacagctccctctttctgcttccgaagttcagcagctttctgctt 165  Q
    ||||||||||||||||||| ||||||||  |||||| ||||| |||  |||||||| |||| |||||| |||||||||||    
T  34935410 tttcgaagttcagcggcttcctgcttacggacttcagcagctacctgcttctgcttgcgaacttcagcggctttctgctt 34935489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 34928778 - 34928914
Alignment:
Q  86 tttcgaagttcagcggctttctgcttacaaacttcaacagctccctctttctgcttccgaagttcagcagctttct------gctttcgaagttcagcag 179  Q
    ||||||||||||||||||| |||||| | ||||||| | |||  ||  ||||| || |||| |||||| |||||||      ||||||||| |||||| |    
T  34928778 tttcgaagttcagcggcttcctgctttcgaacttcagcggctttctgcttctgttttcgaacttcagcggctttctgcttctgctttcgaacttcagcgg 34928877  T
Q  180 ctttctgcttctgcttttgaacttcagcagtttcctg 216  Q
    ||| ||| ||||||| |||||||||||||| ||||||    
T  34928878 cttcctgtttctgctcttgaacttcagcagcttcctg 34928914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 34925481 - 34925556
Alignment:
Q  143 cgaagttcagcagctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcagtttcctgct 218  Q
    ||||||||||| ||||||||||| | || ||||||||||| || |||||||||| ||| |||||||| || |||||    
T  34925481 cgaagttcagcggctttctgcttacaaacttcagcagcttcctccttctgctttcgaagttcagcagctttctgct 34925556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 34929894 - 34929973
Alignment:
Q  86 tttcgaagttcagcggctttctgcttacaaacttcaacagctccctctttctgcttccgaagttcagcagctttctgctt 165  Q
    |||||||||||||||||||  |||||||  |||||| ||||| |||  |||||||| |||| |||||| |||||||||||    
T  34929894 tttcgaagttcagcggcttcttgcttacggacttcagcagctacctgcttctgcttgcgaacttcagcggctttctgctt 34929973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 34929942 - 34929997
Alignment:
Q  158 ttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcagtttc 213  Q
    |||||||| |||| |||||| |||||||||||||||||| |||||||||| |||||    
T  34929942 ttctgcttgcgaacttcagcggctttctgcttctgctttcgaacttcagcggtttc 34929997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 34935458 - 34935513
Alignment:
Q  158 ttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcagtttc 213  Q
    |||||||| |||| |||||| |||||||||||||||||| |||||||||| |||||    
T  34935458 ttctgcttgcgaacttcagcggctttctgcttctgctttcgaacttcagcggtttc 34935513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 34935408 - 34935477
Alignment:
Q  138 gcttccgaagttcagcagctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagc 207  Q
    |||| ||||||||||| |||| |||||| || | ||||||||||  ||||||||||||  ||||||||||    
T  34935408 gctttcgaagttcagcggcttcctgcttacggacttcagcagctacctgcttctgcttgcgaacttcagc 34935477  T

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