View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_114 (Length: 232)
Name: NF1104_low_114
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_114 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 41939742 - 41939597
Alignment:
| Q |
1 |
cagagccaccatgttcatcatcttgatcaagacattcgtcaattccataagctttatgtccatttccaaaagccttgatatgatctttaagtgatctttt |
100 |
Q |
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| T |
41939742 |
cagagccaccatgttcatcatcttgatcaagacattcgtcaattccataagctttatgtccatttccaaaagccttgatatgatctttaagtgatctttt |
41939643 |
T |
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| Q |
101 |
gtgcttaaaatcggacccacaacaacaataccaaagtttcccacag |
146 |
Q |
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| T |
41939642 |
gtgcttaaaatcggacccacaacaacaataccaaagtttcccacag |
41939597 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 36570198 - 36570109
Alignment:
| Q |
56 |
atgtccatttccaaaagccttgatatgatctttaagtgatcttttgtgcttaaaatcggacccacaacaacaataccaaagtttcccaca |
145 |
Q |
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| T |
36570198 |
atgtccacttccaaaagctttgatatgatctttaagagacctcttgtgtttaaaatcagaaccacagatacaataccaaagctttccaca |
36570109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 21035565 - 21035671
Alignment:
| Q |
39 |
tcaattccataagctttatgtccatttccaaaagccttgatatgatctttaagtgatcttttgtgcttaaaatcggacccacaacaacaataccaaagtt |
138 |
Q |
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| T |
21035565 |
tcaattccataagcagcatgaccactcccaaaagctcttatatgatctttaagcgatcgcttatgcttaaaatccgaaccacaaagacaataccaaagct |
21035664 |
T |
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| Q |
139 |
tcccaca |
145 |
Q |
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| T |
21035665 |
ttccaca |
21035671 |
T |
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