View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_118 (Length: 221)
Name: NF1104_low_118
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_118 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 37059594 - 37059780
Alignment:
| Q |
7 |
gtaccgttgattcaaaatattttgtccacaacaaatgaattcaacgagcaatctaggatacgagttaaatccgtaaaaggagttcttaattgacggtttt |
106 |
Q |
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| T |
37059594 |
gtaccgttgattcaaaatagtttctccacaacaaatgaattgaacgaacaatctaggatacgagttaaatccgtaaaaggagttcttaattgacggtttt |
37059693 |
T |
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| Q |
107 |
acgtgtaacatgctttaagttatagatcatagaaacatgcgggattttttaatatgtaaggagggaaaagatacaatgcacaaaggt |
193 |
Q |
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| T |
37059694 |
acgtgtaacatgctttaagttatagatcatagaaacatgcgggattttttaatatgtaaggagggaaaagatacaatgcacaaaggt |
37059780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 30638859 - 30638988
Alignment:
| Q |
12 |
gttgattcaaaatattttgtccacaacaaatgaattcaacgagcaatctaggatacgagttaaatccgtaaaaggagttcttaattgacggttttacgtg |
111 |
Q |
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| T |
30638859 |
gttgatttaaaatagtttcttcacaacaaataaactcggcgagcaatctaggatacaagttaaatctttaaaaagggttcttagttgacaagtttatgtg |
30638958 |
T |
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| Q |
112 |
taacatgctttaagttatagatcatagaaa |
141 |
Q |
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| T |
30638959 |
taacaagctttaagttggagatcaaagaaa |
30638988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 1914113 - 1914233
Alignment:
| Q |
13 |
ttgattcaaaatattttgtccacaacaaatgaattcaacgagcaatctaggatacgagttaaatccgtaaaaggagttcttaattgacggttttacgtgt |
112 |
Q |
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| T |
1914113 |
ttgattcgaaatagtttctccacaacaaatgaactggacgagcaatttagaacacgagttaaattcttaaaagaagttattagttgataggtttacgtgt |
1914212 |
T |
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| Q |
113 |
aacatgctttaagttatagat |
133 |
Q |
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| T |
1914213 |
atcaagccttaagttgtagat |
1914233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 5473676 - 5473610
Alignment:
| Q |
12 |
gttgattcaaaatattttgtccacaacaaatgaattcaacgagcaatctaggatacgagttaaatcc |
78 |
Q |
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| T |
5473676 |
gttgatttgaaatattttctccacaacaaacaaactcaaaaagcaatctaggatacaagttaaatcc |
5473610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 15966998 - 15966893
Alignment:
| Q |
12 |
gttgattcaaaatattttgtccacaacaaatgaattcaacgagcaatctaggatacgagttaaatccgtaaaaggagttc-ttaattgacggttttacgt |
110 |
Q |
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|||||||| ||| | ||| || |||| ||||||| | ||||| |||||||||||| | |||||||| ||||||| ||| ||||||||| | ||||||| |
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| T |
15966998 |
gttgattcgaaaaaatttctcaacaaaaaatgaacttgacgagaaatctaggatacaaattaaatccttaaaagggattctttaattgacaggtttacgt |
15966899 |
T |
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| Q |
111 |
gtaaca |
116 |
Q |
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|||||| |
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| T |
15966898 |
gtaaca |
15966893 |
T |
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