View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_119 (Length: 221)
Name: NF1104_low_119
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_119 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 45218239 - 45218401
Alignment:
| Q |
1 |
tgtgatcaaagtttggtttaacaataagaaagaggaagtttgtaaatgatgtaatgtagcagtaaatgctgtgttatatatgtgtagaaaaagatgtcac |
100 |
Q |
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| T |
45218239 |
tgtgatcaaagtttggtttaacaataagaaagaggaagtttgtgaatgatgtaatgtagcagtaaatgctgtgttatatatgagtagaaaaagatgtcac |
45218338 |
T |
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| Q |
101 |
tattttatagttacaaggtcctagtatagcaagacctaaaaatcaagacattgggtcttgtgg |
163 |
Q |
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| T |
45218339 |
tattttatagttacaaggtcctagtatagcaagacctaaaaatcaagacattggttcttgtgg |
45218401 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 687508 - 687561
Alignment:
| Q |
98 |
cactattttatagttacaaggtcctagtatagcaagacctaaaaatcaagacat |
151 |
Q |
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| T |
687508 |
cactattttacagttacaaggtcttaatatagagagacctaaaaattaagacat |
687561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 704875 - 704928
Alignment:
| Q |
98 |
cactattttatagttacaaggtcctagtatagcaagacctaaaaatcaagacat |
151 |
Q |
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| T |
704875 |
cactattttacagttacaaggtcttaatatagagagacctaaaaattaagacat |
704928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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