View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_12 (Length: 590)
Name: NF1104_low_12
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 40 - 575
Target Start/End: Original strand, 30113962 - 30114483
Alignment:
| Q |
40 |
aaatgttaaacgcacaaacgaagtagaatgatcgttaatttcaatgtagaatatgatatgacaattatgaaaagggaaattgacctttgcaattacctgg |
139 |
Q |
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| T |
30113962 |
aaatgttaaacgcacaaacgaagtagaatgatcgttaatttcaatgtagaatatgatatgacaattatgaaaagggaaattgacctttgcaattacctgg |
30114061 |
T |
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| Q |
140 |
atgtgatatgaagagcatcattaattttagccaggaaagatcttatgtaatgtcacttttatcgcattgtgccagagaatgtaaaagtgtaactaggtcc |
239 |
Q |
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| T |
30114062 |
atgtgatatgaagagcatcattaattttagccaggaaagatcttatgtaatgtcacttttatcgcattgtgccagagaatgtaaaagtgtaactaggtcc |
30114161 |
T |
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| Q |
240 |
acagggaatgtcaattctttttacacataagtaaaataatattattagctactggattatatatatagctacatattaattttgtcgnnnnnnnttgagg |
339 |
Q |
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| T |
30114162 |
acagggaatgtcaattc-ttttacccataagtaaaataatattattagctactgga--------------acatattaattttaccgaaaaaaattgagg |
30114246 |
T |
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| Q |
340 |
gtggaggtgctaaataacaaattaatcatacaataagaattatcaaggtataaaataaaaagattttgtcttcatttggtatttacatatctgcattcag |
439 |
Q |
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| T |
30114247 |
gtggaggtgctaaataacaaattaatcatacaataagaattatcaaggtataaaataaaaagattttgtcttcatttggtatttacatatctgcattcag |
30114346 |
T |
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| Q |
440 |
atgcttacaatataaatggtgaattgc-attnnnnnnnctacaagagctgaaaatgaaattgctatttgctagtccccactagcgatagtgccatatcaa |
538 |
Q |
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| T |
30114347 |
atgcttacaatataaatggtgaattgcaataaaaaaaactacaagagctgaagatgaaattgctatttgctagtccccactagcgatagtgccatatcaa |
30114446 |
T |
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| Q |
539 |
ttaccattaattcatgatgcctcacctcaagaataat |
575 |
Q |
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| T |
30114447 |
ttaccattaattcatgatgcctcacctcaagaataat |
30114483 |
T |
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