View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_13 (Length: 584)
Name: NF1104_low_13
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 11 - 555
Target Start/End: Complemental strand, 39757486 - 39756935
Alignment:
| Q |
11 |
cacagagcaaataagcttattttacacacgcatgcatctccctattcataatatatagggagatagaaggagagttgaattataagctagtagccatatc |
110 |
Q |
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| T |
39757486 |
cacaaagcaaataagcttattttacacacgcatgcatctccctattcata-----tagggagatagaaggagagttgaattataagctagtagccatatc |
39757392 |
T |
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| Q |
111 |
catccatacaatattaaacaacttagttagaactgattactcttgcagctagcaacagcttcttcaacagtgagatacactctgccacctattttgctga |
210 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39757391 |
catccatacaatattaaacaacttagttagaaatgattactcttgcagctagcaacagcttcttcaacagtgagatacactctgccacctattttgctga |
39757292 |
T |
|
| Q |
211 |
caaagtttgacacctttagcttgtgtatcacttgccacctcggatttgcaatggccaactgaatttatccggaataatcaaaaggcagttaattagaggt |
310 |
Q |
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| T |
39757291 |
caaagtttgacacctttagcttgtgtatcacttgccacctcggatttgcaatggccaactgaatttatccggaataatcaaaaggcagttaattagaggt |
39757192 |
T |
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| Q |
311 |
ccaaattatggatcataagatatgtatttttacatt-acatgtatgaaaatgaatgatttttcattattatcatttaagcggttt------ttacagtta |
403 |
Q |
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|||||||||||||||||||||| | || | || || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39757191 |
ccaaattatggatcataagataag-atatgtatttttacatgtatgaaaatgaatgatttttcattattatcatttaagcggtttttgtggttacagtta |
39757093 |
T |
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| Q |
404 |
tcgatcataaccaaaaaggtatgaagatcagtgtgcttaccatccaataaaacatttatagaaacacccttttatttatatt------tacacctaaaaa |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39757092 |
tcgatcataaccaaaaaggtatgaagatcagtgtgcttaccatccaataaaacatttatagaaacacccttttatttatatttacatatacacctaaaaa |
39756993 |
T |
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| Q |
498 |
gaaaatgaagttacctgctttccatgtgtagacaaacacttgtacagttcctccatag |
555 |
Q |
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| T |
39756992 |
gaaaatgaagttacctgctttccatgtgtagacaaacacttgtacagttcctccatag |
39756935 |
T |
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