View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1104_low_15 (Length: 576)
Name: NF1104_low_15
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 202 - 510
Target Start/End: Original strand, 4396198 - 4396508
Alignment:
| Q |
202 |
tggttaccaaaagactcccaaacaatagagtgttaagctacacatgataatcgaaaacacatttatttatcattaaatcaatatgactcgttatatctga |
301 |
Q |
| |
|
||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4396198 |
tggttaccaaaagactcccaaacaagagtgtgctaagctacacatgataatcgaaaacaaatttatttatgattaaatcaatatgactcgttatatctga |
4396297 |
T |
|
| Q |
302 |
tttatttatcattaaattataaataagctgaatataattttacaagttatcagattttatgtgttttgtttgatcnnnnnnnggtgtcaacctgttagtg |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
4396298 |
tttatttatcattaaattataaataagctgaatataattttacaagttatcagattttatgtgttttgtttgatcaaaaaaaggtgtcaacttgttagtg |
4396397 |
T |
|
| Q |
402 |
tat--ggcatttaaaagcgtatgtagttaacgtgaatcagaaaggtctgacccaaaacggaatggtaccaacgttttcacacaaactgccaaaatttgtc |
499 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4396398 |
tatggggcatttaaaagcgtatgtagttaacatgaatcagaaaggtctgacccaaaacggaatggtaccaacgttttcacacaaactgccaaaatttgtc |
4396497 |
T |
|
| Q |
500 |
ttcacatgagg |
510 |
Q |
| |
|
|||| |||||| |
|
|
| T |
4396498 |
ttcatatgagg |
4396508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 4396064 - 4396169
Alignment:
| Q |
68 |
acgttgaagaagttagaatgcaatatattaataaacgaagaagtggcaaaagaactaggaaaaagagtatagttacatcaaatgatcaaggtcaagctga |
167 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |
|
|
| T |
4396064 |
acgttgaagaagttagaatgaaatatattaataaacgaagaagtggcaaaagaactaggaaaacgaatatagttacatcaaatgatcaaggtcaagttga |
4396163 |
T |
|
| Q |
168 |
taaccc |
173 |
Q |
| |
|
| |||| |
|
|
| T |
4396164 |
tcaccc |
4396169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 4396007 - 4396039
Alignment:
| Q |
11 |
ctactttactagtaagatagtgttgcatcatga |
43 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
4396007 |
ctactttactagtaagatagtgttgtatcatga |
4396039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 16820501 - 16820455
Alignment:
| Q |
106 |
agaagtggcaaaagaactaggaaaaagagtatagttacatcaaatga |
152 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
16820501 |
agaagtgccaaaagaactagaaaaaagagtatagttaaatcaaatga |
16820455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 6356886 - 6356845
Alignment:
| Q |
108 |
aagtggcaaaagaactaggaaaaagagtatagttacatcaaa |
149 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6356886 |
aagtgccaaaagaacaaggaaaaagagtatagttacatcaaa |
6356845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University