View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_16 (Length: 567)
Name: NF1104_low_16
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 190 - 534
Target Start/End: Original strand, 38038680 - 38039025
Alignment:
| Q |
190 |
cttaattagaatctggttcgaacttactagcttattgcatttacatcattaagtgtttttagtattttgcaacaaacatgattttactagcttattgggt |
289 |
Q |
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| T |
38038680 |
cttaactagaatctggttcgaacttactagcttattgcatttacatcattaagtgtttttagtattttgcaacaaacatcattttactagcttattgggt |
38038779 |
T |
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| Q |
290 |
attatggtataaggtaccacttttttgatgtacaatataaaagag-aaatacagtaaaaagagactgactatgattaagcaattctgaaaactggggttt |
388 |
Q |
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| T |
38038780 |
attatggtataaggtaccacttttttgatgtacaatataaaagaggaaatacagtaaaaagagactaactatgattaagcaattctgaaaactggggttt |
38038879 |
T |
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| Q |
389 |
atatcttgttgtagattcaccaatttttcttgcttatacaagcttaagcatatagtataaatgaatcatcatctaacggaactgctagtccttaagccaa |
488 |
Q |
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| T |
38038880 |
atatcttgttgtagattcaccaatttttcttgcttatacaagcttaagcatatagtataaatgaatcatcatctaacggaactgctagtccttaagccaa |
38038979 |
T |
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| Q |
489 |
ttctttgtatttgaggtgatgacaccacaggttcagacacgtaaaa |
534 |
Q |
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| T |
38038980 |
ttctttgtatttgaggtgatgacaccacaggttcagacacgcaaaa |
38039025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 38038530 - 38038683
Alignment:
| Q |
4 |
tgttctgttctgttcttatgctgttaattgtgcaattgatacatgttgtttgaggaagtaaattcgaagtcggatacttgtatttcatgattattgacaa |
103 |
Q |
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| T |
38038530 |
tgttctgttctgttcttatgctgttaattgtgcaattgatacatgctgtttgagggagtaaattcgaagtcggatacttgtatttcatgattattgacaa |
38038629 |
T |
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| Q |
104 |
gaaatgaaattgaaaaagaggaatataaatggccctccaatgcatatgaactta |
157 |
Q |
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| T |
38038630 |
gaaatgaaattgaaaaagaggaatataaatggccctccaatgcatatgaactta |
38038683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 38025340 - 38025404
Alignment:
| Q |
252 |
tattttgcaacaaacatgattttactagcttattgggtattatggtataaggtaccacttttttg |
316 |
Q |
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| T |
38025340 |
tattttgcaacgaacaagattttacttgcttattgggttttgtggtgtaaggtaccacttttttg |
38025404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 38030739 - 38030803
Alignment:
| Q |
252 |
tattttgcaacaaacatgattttactagcttattgggtattatggtataaggtaccacttttttg |
316 |
Q |
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| T |
38030739 |
tattttgcaacgaacaagattttacttgcttattgggttttgtggtgtaaggtaccacttttttg |
38030803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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