View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_18 (Length: 484)
Name: NF1104_low_18
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_18 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 198 - 484
Target Start/End: Complemental strand, 41447257 - 41446969
Alignment:
| Q |
198 |
tatgatatcactaatattaatag--acatttgtagttattgacgcacgagacttgatcgatgatttgtcgaatatgacatcgagttaaaatacattggag |
295 |
Q |
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| T |
41447257 |
tatgatatcactaatattaatagttacatttgtagttattgacgcacgagacttgatcgatgatttgtcgaatatgacatcaagttaaaatacattggag |
41447158 |
T |
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| Q |
296 |
aaaaacatatttctgcatgatttatgtaaacaactatttcaaaacatgtggaaaaactaaagtattcgtgccgattattattgcatatatatagcaaaga |
395 |
Q |
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| T |
41447157 |
aaaaacatatttctgcatgatttatgtaaacaactatttcaaaacatgtggaaaaactaaagtattcgtgacgattattattgcatatatatagcaaaga |
41447058 |
T |
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| Q |
396 |
gagttataaagaatgattacgtgaaccagttatttagttaggttgttgggcggggttacatttctttgctagctgggcataaatcctct |
484 |
Q |
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| T |
41447057 |
gagttataaagaatgattacgtgaaccagtaatttagttaggttgttgcgtggggttacatttctttgctagctgggcataaatcctct |
41446969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 41447326 - 41447243
Alignment:
| Q |
101 |
atacaaatctccgttgtttgataattcattttaaccatataattttagaggtcttcaactacttaacaatatgatatcactaat |
184 |
Q |
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| T |
41447326 |
atacacatctccgttgagtgataattcattttaaccatataattttagaggtcttcaactacttaacaatatgatatcactaat |
41447243 |
T |
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