View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_2 (Length: 754)
Name: NF1104_low_2
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 79 - 725
Target Start/End: Original strand, 9231708 - 9232354
Alignment:
| Q |
79 |
agaagcaaaggcagctagatatggtggcaacctaatgataaatgattgacccatttataaaatttaaaaacataaaccaatcacaacattttctcatgag |
178 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9231708 |
agaaacaaagacagctagatatggtggcaacctaatgataaatgattgacccatttataaaattaaaaaacataaaccaatcacaacattttctcatgag |
9231807 |
T |
|
| Q |
179 |
ggcttgttttaaaaaatttcatannnnnnngaagacttgaatgatgaaaagacaagctcgattttcttgttcatcatttgtacaactacaaacattggta |
278 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9231808 |
ggcttgttttaaaaaatttcatatttttttgaagacttgaatgatgaaaagacaagctcaattttcttgttcatcatttgtacaactacaaacattggta |
9231907 |
T |
|
| Q |
279 |
aaaatatttgcttcaatttttatcctattccatcaaaattgtctagctaagaatcaccaaccatgtccaacttcatcttgcggcaaaattcgcaacataa |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9231908 |
aaaatatttgcttcaatttttatcctattccatcaaaattgtctagctaagcatcaccaaccatgtccaacttcatcttgcggcaaaattcgcaacataa |
9232007 |
T |
|
| Q |
379 |
catatccttttcgtctcaaaaccgatccaggccactgtggaaacacaaggtatgaattagattgcaacgaaaacggtccatcattaactctgttctcggg |
478 |
Q |
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||||||| ||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| || |
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| T |
9232008 |
catatccatttcgtctcaaaaccgatccaaatcactgcggagacacaaggtacgaattagattgcaacaaaaacggtccatcattaaccatgttctccgg |
9232107 |
T |
|
| Q |
479 |
gaaatactatgtacaacacattgattacaagagatttaaaatttcgttaagtgacgcgggtgcagtggaagacactaattgctcttttatcccacggtac |
578 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9232108 |
gaaatactatgtacaacacattgattacaagggatttaaaattcgattaagtgacgcgggtgcagtggaagatgctaattgctcttttatcccacggtac |
9232207 |
T |
|
| Q |
579 |
tttttatacgatcgaagttttaataatgttctttttggcgaagacaattttggatctgaaccgttcattctggatccaataaatccattgagaatagcgt |
678 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9232208 |
tttttatatgatcaaagttttaataatgttctttttggagaagacaattttggatctgaaccgttcattctggatccaataaatccattgagaatagcgt |
9232307 |
T |
|
| Q |
679 |
atttcaattgttcaagtccaataaaagatccacggtacgttaaggtg |
725 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9232308 |
atttcaattgttcaagtccaataaaagatccacggtacgttaaggtg |
9232354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 283 - 586
Target Start/End: Complemental strand, 9386733 - 9386430
Alignment:
| Q |
283 |
tatttgcttcaatttttatcctattccatcaaaattgtctagctaagaatcaccaaccatgtccaacttcatcttgcggcaaaattcgcaacataacata |
382 |
Q |
| |
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|||||||||||||| || || | | |||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||| |||||||||||| |
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| T |
9386733 |
tatttgcttcaattcttctcatttctcatcaaaattgtcttgctaagcatcaccaaccatgcccaacgtcatcatgcggcaaaatcaccaacataacata |
9386634 |
T |
|
| Q |
383 |
tccttttcgtctcaaaaccgatccaggccactgtggaaacacaaggtatgaattagattgcaacgaaaacggtccatcattaactctgttctcggggaaa |
482 |
Q |
| |
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|| |||||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |
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| T |
9386633 |
cccatttcgtctcaaaactgatccaaaccactgtggggacaaaaggtatgaattagattgcaacgaaaatggtccatcattaaccatgttctccgggaaa |
9386534 |
T |
|
| Q |
483 |
tactatgtacaacacattgattacaagagatttaaaatttcgttaagtgacgcgggtgcagtggaagacactaattgctcttttatcccacggtactttt |
582 |
Q |
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||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |
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| T |
9386533 |
tactatgtacaacacatagattacaagaggtttataattcgattaagtgacgcgggtgcagtggaagatgctaattgctctttcatcccgcggtactttt |
9386434 |
T |
|
| Q |
583 |
tata |
586 |
Q |
| |
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|||| |
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|
| T |
9386433 |
tata |
9386430 |
T |
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