View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_21 (Length: 477)
Name: NF1104_low_21
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 37212206 - 37212622
Alignment:
| Q |
1 |
taaccatgtcctcaggctggctttgcatttcagaatccacctcatcatcttccgctcccgccatggaaaccagttgagttagtttgaggctaaaggatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37212206 |
taaccatgtcctcaggctggctttgcatttcagaatcaacctcatcatcttccgctcccgccatggaaaccagttgagttagtttgaggctaaaggatgg |
37212305 |
T |
|
| Q |
101 |
ggatgaacatccagtccttgaaatacacttcatatgattctcatttgttacttcctcaaccatagggatcctttcttcttcaaatgtattttttctaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37212306 |
ggatgaacatccagtccttgaaatacacttcatatgattctcatttgttacatcctcaaccatagggatcctttcttcttcaaatgtattttttctaacc |
37212405 |
T |
|
| Q |
201 |
attaggcttgaatggttggacggtgaattttcagcctcatcttcttcatccatcatttctcgtccacctactgttgagtattcaacattttcagcctctt |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37212406 |
attaggcttgaatggttggacggtgaattttcagccttatcttcttcatccatcatttctcgtccacctactgtcgagtattcaacattttcagcctctt |
37212505 |
T |
|
| Q |
301 |
tatgtcccagctctggttccaatgtgggaggatcagctatttgatgagaactttcttctggaatttgatatgcctgcaccaaatctcgtaatagattaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37212506 |
tatgtcccagctctggttccaatgtgggaggatcagctatttgatgagaactttcttctggaacttgatatgcctgcaccaaatctcgtaatagattaaa |
37212605 |
T |
|
| Q |
401 |
ttaacaattaacgattc |
417 |
Q |
| |
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||||||||||||||||| |
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|
| T |
37212606 |
ttaacaattaacgattc |
37212622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 37217787 - 37217851
Alignment:
| Q |
269 |
tactgttgagtattcaacattttcagcctctttatgtcccagctctggttccaatgtgggaggat |
333 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
37217787 |
tactgttgaattttcaacattttcagcttctttatgtcccaactctggttccaatatgggaggat |
37217851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 37183833 - 37183900
Alignment:
| Q |
68 |
aaccagttgagttagtttgaggctaaaggatggggatgaacatccagtccttgaaatacacttcatat |
135 |
Q |
| |
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| T |
37183833 |
aaccacttcagttagtttgaggctaaaagatggggatagacatccagcccttgaaatagacttcatat |
37183900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 37194965 - 37195032
Alignment:
| Q |
68 |
aaccagttgagttagtttgaggctaaaggatggggatgaacatccagtccttgaaatacacttcatat |
135 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||||| |||||||| |||||||||| ||||||||| |
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|
| T |
37194965 |
aaccacttcagttagtttgaggctaaaagatggggatagacatccagcccttgaaatagacttcatat |
37195032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 37184124 - 37184191
Alignment:
| Q |
266 |
acctactgttgagtattcaacattttcagcctctttatgtcccagctctggttccaatgtgggaggat |
333 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||||||||| ||| ||||||||||| |||| |||||| |
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| T |
37184124 |
acctcctgttgaattttcaacattttcagcctctttatgctccaactctggttccattgtgagaggat |
37184191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 37195256 - 37195323
Alignment:
| Q |
266 |
acctactgttgagtattcaacattttcagcctctttatgtcccagctctggttccaatgtgggaggat |
333 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||||||||| ||| ||||||||||| |||| |||||| |
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| T |
37195256 |
acctcctgttgaattttcaacattttcagcctctttatgctccaactctggttccattgtgagaggat |
37195323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 417
Target Start/End: Original strand, 37217896 - 37217976
Alignment:
| Q |
337 |
ctatttgatgagaactttcttctggaatttgatatgcctgcaccaaatctcgtaatagattaaattaacaattaacgattc |
417 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||||| |||| || |||||||| |||| ||||||||| |||| |
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|
| T |
37217896 |
ctatttgatgagaaccttgttctggaacttgatatgcctgcgtcaaaaatcataatagatcaaatatacaattaacaattc |
37217976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 37203249 - 37203318
Alignment:
| Q |
353 |
ttcttctggaatttgatatgcctgcaccaaatctcgtaatagat-taaattaacaattaacgattctatt |
421 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | || |||| |||||||||||||| |||||||| |
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| T |
37203249 |
ttcttctggaacttgatatgcctgcaccaaatcacaaaacagatagaaattaacaattaaaaattctatt |
37203318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 413938 - 413884
Alignment:
| Q |
77 |
agttagtttgaggctaaaggatggggatgaacatccagtccttgaaatacacttc |
131 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
413938 |
agttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttc |
413884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 333
Target Start/End: Original strand, 7527981 - 7528107
Alignment:
| Q |
207 |
cttgaatggttggacggtgaattttcagcctcatcttcttcatccatcatttctcgtccacctactgttgagtattcaacattttcagcctctttatgtc |
306 |
Q |
| |
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|||||| || ||||| ||||||||||| ||| |||||||| |||||| | ||| || || ||||||||| | ||||||||| ||||||||| |||| |
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| T |
7527981 |
cttgaacggctggacagtgaattttcatccttgtcttcttcctccatcctctctggtacatatactgttgaattctcaacatttctagcctctttctgtc |
7528080 |
T |
|
| Q |
307 |
ccagctctggttccaatgtgggaggat |
333 |
Q |
| |
|
|||||||| |||||||||||||||||| |
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|
| T |
7528081 |
ccagctcttgttccaatgtgggaggat |
7528107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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