View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_23 (Length: 460)
Name: NF1104_low_23
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 4776274 - 4775852
Alignment:
| Q |
13 |
attctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatacttggtgccttacactacctttcaatcactcgcccagac |
112 |
Q |
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| T |
4776274 |
attctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgccttacactacctttcaatcactcgcccagac |
4776175 |
T |
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| Q |
113 |
atagcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatctcaaatccacca |
212 |
Q |
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| T |
4776174 |
attgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatctcaaatccacca |
4776075 |
T |
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| Q |
213 |
tctccaatggactccatctcacaagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacagg |
308 |
Q |
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| T |
4776074 |
tctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggagacacaattgacaggaaatcaacagg |
4775975 |
T |
|
| Q |
309 |
tgcttatttaatttatattggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactata |
408 |
Q |
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| T |
4775974 |
tgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactata |
4775875 |
T |
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| Q |
409 |
gcagccactactcaagaattaat |
431 |
Q |
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| T |
4775874 |
gcagccactactcaagaattaat |
4775852 |
T |
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Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 248 - 431
Target Start/End: Complemental strand, 43061400 - 43061213
Alignment:
| Q |
248 |
acaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatct |
343 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
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| Q |
344 |
cttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaat |
431 |
Q |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaattaat |
43061213 |
T |
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