View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_25 (Length: 445)
Name: NF1104_low_25
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 39775445 - 39775053
Alignment:
| Q |
11 |
caaaggtgaaccaatactcttacaattgtcaaagttgatacccagtgttatgtcaaaacccaatccaattgagtttattgctttctgagctgcttcaaaa |
110 |
Q |
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| T |
39775445 |
caaaggtgaaccaatactcttacaattgtcaaagttgatatccagtgttatgtcaaaacccaatccaattgagtttattgctttctgagctgcttcaaaa |
39775346 |
T |
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| Q |
111 |
cgtgaaactctttgtgatggatccataaattattacacagtttgaagatgatcaagaaaacttgaagagagaatcattgc----------ataggatgga |
200 |
Q |
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| T |
39775345 |
cgtgaaactctttgtgatggatccataaattattacacagtttgaaggtgatcaagaaaacttgaagagagaatcattgcatagcatagcataggatgga |
39775246 |
T |
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| Q |
201 |
ggaacaattcaatgactaggtgttgacttgtatcttgacttgagtttggttggatggtttattcannnnnnnncttcatttggcatttatttttaaataa |
300 |
Q |
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| T |
39775245 |
ggaacaattcaatgactaggtgttgacttgtatcttgacttgagtttggttggatggtttattcattttttttgttcatttggcatttatttttaaataa |
39775146 |
T |
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| Q |
301 |
aaatgttgttccccatttaatccatcaatataagttcacatatagtttcccgaatttcaatattctaatttaagataaatattactgtaaaca |
393 |
Q |
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| T |
39775145 |
aaatgttgaaccccatttaatccatcaatataagttcacacatagtttcccgaatatcaatattctaatttaagataaatattaccgtaaaca |
39775053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 39793296 - 39793196
Alignment:
| Q |
28 |
tcttacaattgtcaaagttgatacccagtgttatgtcaaaacccaatccaattgagtttattgctttctgagctgcttcaaaacgtgaaactctttgtga |
127 |
Q |
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| T |
39793296 |
tcttacagttgtcaaagttgatatcttgtgttaaatcaaaacccaacccaagtatgtttattgctttctgggcagcttcaaaaccagaaacacttggtga |
39793197 |
T |
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| Q |
128 |
t |
128 |
Q |
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| T |
39793196 |
t |
39793196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 39787799 - 39787717
Alignment:
| Q |
28 |
tcttacaattgtcaaagttgatacccagtgttatgtcaaaacccaatccaattgagtttattgctttctgagctgcttcaaaa |
110 |
Q |
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| T |
39787799 |
tcttacagttgtcaaagttaatatcttgtgttaaatcaaaacccaaaccaagtgtgtttattgctttttgggctgcttcaaaa |
39787717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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