View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1104_low_29 (Length: 432)
Name: NF1104_low_29
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_29 |
 |  |
|
| [»] scaffold0385 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 113 - 425
Target Start/End: Original strand, 2327611 - 2327919
Alignment:
| Q |
113 |
cagcggaatattatatgtagatttgtcacattggtaagattttgcttcatacaatgatccattgtgcatacatatgcttttactatcatagttgttcatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2327611 |
cagcggaatattatatgtagatttgtcacattggtaagattttgcttcatacaacgatccattatgcatacatatgcttttactatcatagttgttcatt |
2327710 |
T |
 |
| Q |
213 |
tttatatatcttgtttatggtatagaataaaacgtgctagcataacataagttaatgta---gttataatattaaaacttgctttattttggtagactga |
309 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2327711 |
tttatatatcttgtttctggtatagaataaaacgtgctcgcataacataagttaatgtagttgttataatattaaaacttgctttattttggtagactga |
2327810 |
T |
 |
| Q |
310 |
tacagattatgggagtagactgatatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatccttgtgttc |
407 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||| |||||| | |||||||||||||| || || ||| ||||||||||| |
|
|
| T |
2327811 |
tacagattatgg---------gatatttaattattatttcttctatctttttcttttttatgtgtgtgtgaccaaataaagagttcaattccttgtgttc |
2327901 |
T |
 |
| Q |
408 |
attcaagagtctctggtg |
425 |
Q |
| |
|
|| ||||||| ||||||| |
|
|
| T |
2327902 |
atccaagagtttctggtg |
2327919 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 28492210 - 28492254
Alignment:
| Q |
332 |
atatttaattattatttcttctacctttttcctttttatatgtgt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28492210 |
atatttaattattatttcttctaccttttttctttttatatgtgt |
28492254 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 2331351 - 2331446
Alignment:
| Q |
150 |
gattttgcttcatacaatgatccattgtgcatacatatgcttttactatcatagttgttcatttttatatatcttgtttatggtatagaataaaac |
245 |
Q |
| |
|
||||||| ||||| ||||||| || ||||||||||| | |||||||||||||||||||||| ||| ||||||||||| | |||| |||||||| |
|
|
| T |
2331351 |
gattttgtttcatcaaatgatcacttatgcatacatattcctttactatcatagttgttcattcttacatatcttgtttcttatataaaataaaac |
2331446 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 408
Target Start/End: Complemental strand, 10110839 - 10110766
Alignment:
| Q |
337 |
taattattatttcttctacctttttcctttttat--atgtgtgaccaaatatagggtccaaatccttgtgttca |
408 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||| |||| |
|
|
| T |
10110839 |
taatcattatttcttctacctttttcctttttatgcgtgtgtgaccaaatagaggattcaaatccttgtattca |
10110766 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 27639191 - 27639266
Alignment:
| Q |
333 |
tatttaattattatttcttctacctttttcctttttatatgt--gtgaccaaatatagggtccaaatccttgtgttc |
407 |
Q |
| |
|
|||||||||||||||| |||||| |||||| ||||||| ||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
27639191 |
tatttaattattattttttctacttttttc-tttttatgtgtctgtgaccaaatagagggtccaaatctttgtgttc |
27639266 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 2294406 - 2294490
Alignment:
| Q |
104 |
ataacacagcagcggaatattatatgtagatttgtcacattggtaagattttgcttcatacaatgatccattgtgcatacatatgc |
189 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||||||||| | |||| ||||||| |||||| |||||||| || |||||| |||||| |
|
|
| T |
2294406 |
ataacacagcaggggagtattatatgtggatttgtcata-tggtgggattttgtttcatataatgatccgttatgcatatatatgc |
2294490 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 2304214 - 2304275
Alignment:
| Q |
184 |
atatgcttttactatcatagttgttcatttttatatatcttgtttatggtatagaataaaac |
245 |
Q |
| |
|
|||||| |||| ||||||| ||||||||| ||||||||||||||| | ||||| |||||||| |
|
|
| T |
2304214 |
atatgcctttaatatcataattgttcattcttatatatcttgtttcttgtataaaataaaac |
2304275 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 2321718 - 2321798
Alignment:
| Q |
104 |
ataacacagcagcggaatattatatgtagatttgtcacattggtaagattttgcttcatacaatgatccattgtgcatacat |
185 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||| ||| || ||| ||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
2321718 |
ataacacaacaggggaatattatatgtggatttctcatat-ggtcggattttgtttcatacaatgatcccttatgcatacat |
2321798 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 417
Target Start/End: Complemental strand, 43377664 - 43377579
Alignment:
| Q |
333 |
tatttaattattatttcttctacctttttcctttt-tatatgtgtgaccaaatatagggtccaaatccttgtgttcattcaagagt |
417 |
Q |
| |
|
||||||||| |||||| |||||| ||||| |||| | | |||||||||||||| |||||||||||| |||||| || |||||||| |
|
|
| T |
43377664 |
tatttaattgttattttttctacttttttatttttatgtgtgtgtgaccaaatagagggtccaaatctttgtgtccactcaagagt |
43377579 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 43079148 - 43079071
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttcctttttatatgtgtg--accaaatatagggtccaaatccttgtgt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
43079148 |
tgatatttaattattatttcttctaccttttttctttttatgtgtgtgtaaccaaataaagggtccaaatccttgtgt |
43079071 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 36286505 - 36286431
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttcctttttatatgtgtgaccaaatatagggtccaaatccttgtgt |
405 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| | | |||||||||||||| | || ||||||||||||| |
|
|
| T |
36286505 |
tgatatttaattattattttttctaccttttt-ttttatgtgtgtgtgaccaaatagaaagttcaaatccttgtgt |
36286431 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Original strand, 43079187 - 43079220
Alignment:
| Q |
372 |
tgtgtgaccaaatatagggtccaaatccttgtgt |
405 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
43079187 |
tgtgtgaccaaatagagggtccaaatccttgtgt |
43079220 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 25954345 - 25954268
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttcctttttatatg--tgtgaccaaatatagggtccaaatccttgtgt |
405 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||||||||||||||||| |
|
|
| T |
25954345 |
tgatatttaattattatttcttatacctttttcctttttatgtgtatgtgaccaaatagagggtccaaatccttgtgt |
25954268 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 2021507 - 2021432
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttcctttttatatgtg--tgaccaaatatagggtccaaatccttgt |
403 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
2021507 |
tgatatttaattattatttcttctatctttttcctttttatatgtgtctgaccaaatagagggtccaaattcttgt |
2021432 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 740709 - 740784
Alignment:
| Q |
332 |
atatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatccttgtgt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | |||||||||||||| ||| ||||||||||||||| |
|
|
| T |
740709 |
atatttaattattatttcttctaccttttttttttttatgtttgtgtgaccaaataaaggatccaaatccttgtgt |
740784 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 37047923 - 37047996
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatcctt |
401 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||| | |||||||| ||||| ||||||||||||||| |
|
|
| T |
37047923 |
tgatatttaattattatttcttctatcttttttctttttatgtgtgtgtgactaaatagagggtccaaatcctt |
37047996 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 417
Target Start/End: Complemental strand, 16214569 - 16214484
Alignment:
| Q |
333 |
tatttaattattatttcttctacctttttcctttttat--atgtgtgaccaaatatagggtccaaatccttgtgttcattcaagagt |
417 |
Q |
| |
|
|||||||||||||||| |||||| |||||| ||||||| ||||||||||||||| || ||||||||| ||||||||| ||||||| |
|
|
| T |
16214569 |
tatttaattattattttttctac-tttttcatttttatgtatgtgtgaccaaatagagagtccaaatctttgtgttcacccaagagt |
16214484 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 32384218 - 32384125
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttcctttttatatg------tgtgaccaaatatagggtccaaatccttgtgttcattcaagagt |
417 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||| | || |||||||||||| | ||||||||||||||||| || |||||||| |
|
|
| T |
32384218 |
tgatatttaattattatttcttttatctttttcctttttgtgtgtgtgactgtgaccaaatagaaggtccaaatccttgtgtccactcaagagt |
32384125 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 7116697 - 7116621
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttcctttt-tatatgtgtgaccaaatatagggtccaaatccttgtgt |
405 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| | | |||||||| ||||| | ||| |||||| |||||| |
|
|
| T |
7116697 |
tgatatttaattattatttcttatacctttttctttttatgtgtgtgtgactaaatagaaggttcaaatctttgtgt |
7116621 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 45333128 - 45333205
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatccttgtgt |
405 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||||||| |
|
|
| T |
45333128 |
tgatatttaattattatttcttctagctttttcctttttatgtgtgtgtgaccaaatagagggtccaaatccttgtgt |
45333205 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 48469489 - 48469566
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttcctttttat--atgtgtgaccaaatatagggtccaaatccttgtgt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||| |
|
|
| T |
48469489 |
tgatatttaattattatttcttctacctttttcctttttatgcgtgtgtgaccaaatagaggattcaaatccttgtgt |
48469566 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 48469449 - 48469406
Alignment:
| Q |
372 |
tgtgtgaccaaatatagggtccaaatccttgtgttcattcaaga |
415 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || |||||| |
|
|
| T |
48469449 |
tgtgtgaccaaatagagggtccaaatccttgtgtccactcaaga |
48469406 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 405
Target Start/End: Complemental strand, 26032729 - 26032660
Alignment:
| Q |
336 |
ttaattattatttcttctacctttttcctttttatatgtgtgaccaaatatagggtccaaatccttgtgt |
405 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||| ||||| || ||||| || |||||||| |||||| |
|
|
| T |
26032729 |
ttaattattattttttctactttttttctttttatgtgtgttactaaataaagtatccaaatctttgtgt |
26032660 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 38552447 - 38552370
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatccttgtgt |
405 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
38552447 |
tgatatttaattattatttcttctatctttttcctgtttatgtgtgtgtgaccaaatagagggttcaaatccttgtgt |
38552370 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 37306104 - 37306179
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatccttgt |
403 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| | |||||||||||||| ||||| ||||||||||| |
|
|
| T |
37306104 |
tgatatttaattattacttcttctaattttttcctttttatgtgtgtgtgaccaaatagagggttcaaatccttgt |
37306179 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 33718052 - 33718119
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttcctttttatatgtgtgaccaaatatagggtccaaat |
397 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||| | |||||| ||||||| | ||||||||| |
|
|
| T |
33718052 |
tgatagttaattattatttcttctaccttttttctttttgtgtgtgtggccaaatagaaggtccaaat |
33718119 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 377
Target Start/End: Original strand, 51017539 - 51017586
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttcctttttatatgtgtg |
377 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| || |||||| |
|
|
| T |
51017539 |
tgatatttaattattattttttctatctttttccttttaatgtgtgtg |
51017586 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 33718010 - 33717969
Alignment:
| Q |
374 |
tgtgaccaaatatagggtccaaatccttgtgttcattcaaga |
415 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
33718010 |
tgtgaccaaataaatggtccaaatccttgtgtccattcaaga |
33717969 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 37991301 - 37991350
Alignment:
| Q |
333 |
tatttaattattatttcttctacctttttcctttttatatgtgtgaccaaat |
384 |
Q |
| |
|
|||||||||| ||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
37991301 |
tatttaattactatttttcctacctttt--ctttttatatgtgtgaccaaat |
37991350 |
T |
 |
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Target: scaffold0385 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0385
Description:
Target: scaffold0385; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 12795 - 12749
Alignment:
| Q |
330 |
tgatatttaattattatttcttctacctttttcctttttatatgtgt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12795 |
tgatatttaattattatttcttctacctttttcctttttatgtgtgt |
12749 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0385; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 406
Target Start/End: Complemental strand, 11984 - 11949
Alignment:
| Q |
371 |
atgtgtgaccaaatatagggtccaaatccttgtgtt |
406 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11984 |
atgtgtgaccaaatagagggtccaaatccttgtgtt |
11949 |
T |
 |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 43788173 - 43788238
Alignment:
| Q |
333 |
tatttaattattatttcttctacctttttcctttt-tatatgtgtgaccaaatatagggtccaaat |
397 |
Q |
| |
|
||||||||| |||||| |||||| |||||| |||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
43788173 |
tatttaattgttattttttctacttttttctttttatatgtgtgtgaccaaataaagggtccaaat |
43788238 |
T |
 |
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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 4977465 - 4977417
Alignment:
| Q |
336 |
ttaattattatttcttctacctttttcctttttatatgtgtgaccaaata |
385 |
Q |
| |
|
|||||| |||||| |||||| |||||||||||||||||| |||||||||| |
|
|
| T |
4977465 |
ttaattgttatttgttctac-tttttcctttttatatgtctgaccaaata |
4977417 |
T |
 |
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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 32890176 - 32890105
Alignment:
| Q |
333 |
tatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatccttgt |
403 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| | ||||||| |||||| | |||||||||| |||| |
|
|
| T |
32890176 |
tatttaattattattttttcta-ctttttcctttttatgtgtgtgtgatcaaataaatggtccaaatctttgt |
32890105 |
T |
 |
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