View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1104_low_29 (Length: 432)

Name: NF1104_low_29
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1104_low_29
NF1104_low_29
[»] chr2 (9 HSPs)
chr2 (113-425)||(2327611-2327919)
chr2 (332-376)||(28492210-28492254)
chr2 (150-245)||(2331351-2331446)
chr2 (337-408)||(10110766-10110839)
chr2 (333-407)||(27639191-27639266)
chr2 (104-189)||(2294406-2294490)
chr2 (184-245)||(2304214-2304275)
chr2 (104-185)||(2321718-2321798)
chr2 (333-417)||(43377579-43377664)
[»] chr7 (3 HSPs)
chr7 (330-405)||(43079071-43079148)
chr7 (330-405)||(36286431-36286505)
chr7 (372-405)||(43079187-43079220)
[»] chr5 (7 HSPs)
chr5 (330-405)||(25954268-25954345)
chr5 (330-403)||(2021432-2021507)
chr5 (332-405)||(740709-740784)
chr5 (330-401)||(37047923-37047996)
chr5 (333-417)||(16214484-16214569)
chr5 (330-417)||(32384125-32384218)
chr5 (330-405)||(7116621-7116697)
[»] chr1 (4 HSPs)
chr1 (330-405)||(45333128-45333205)
chr1 (330-405)||(48469489-48469566)
chr1 (372-415)||(48469406-48469449)
chr1 (336-405)||(26032660-26032729)
[»] chr4 (6 HSPs)
chr4 (330-405)||(38552370-38552447)
chr4 (330-403)||(37306104-37306179)
chr4 (330-397)||(33718052-33718119)
chr4 (330-377)||(51017539-51017586)
chr4 (374-415)||(33717969-33718010)
chr4 (333-384)||(37991301-37991350)
[»] scaffold0385 (2 HSPs)
scaffold0385 (330-376)||(12749-12795)
scaffold0385 (371-406)||(11949-11984)
[»] chr3 (1 HSPs)
chr3 (333-397)||(43788173-43788238)
[»] chr6 (2 HSPs)
chr6 (336-385)||(4977417-4977465)
chr6 (333-403)||(32890105-32890176)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 113 - 425
Target Start/End: Original strand, 2327611 - 2327919
Alignment:
113 cagcggaatattatatgtagatttgtcacattggtaagattttgcttcatacaatgatccattgtgcatacatatgcttttactatcatagttgttcatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
2327611 cagcggaatattatatgtagatttgtcacattggtaagattttgcttcatacaacgatccattatgcatacatatgcttttactatcatagttgttcatt 2327710  T
213 tttatatatcttgtttatggtatagaataaaacgtgctagcataacataagttaatgta---gttataatattaaaacttgctttattttggtagactga 309  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
2327711 tttatatatcttgtttctggtatagaataaaacgtgctcgcataacataagttaatgtagttgttataatattaaaacttgctttattttggtagactga 2327810  T
310 tacagattatgggagtagactgatatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatccttgtgttc 407  Q
    ||||||||||||         |||||||||||||||||||||||| ||||||| ||||||  | |||||||||||||| || || ||| |||||||||||    
2327811 tacagattatgg---------gatatttaattattatttcttctatctttttcttttttatgtgtgtgtgaccaaataaagagttcaattccttgtgttc 2327901  T
408 attcaagagtctctggtg 425  Q
    || ||||||| |||||||    
2327902 atccaagagtttctggtg 2327919  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 28492210 - 28492254
Alignment:
332 atatttaattattatttcttctacctttttcctttttatatgtgt 376  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
28492210 atatttaattattatttcttctaccttttttctttttatatgtgt 28492254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 2331351 - 2331446
Alignment:
150 gattttgcttcatacaatgatccattgtgcatacatatgcttttactatcatagttgttcatttttatatatcttgtttatggtatagaataaaac 245  Q
    ||||||| |||||  |||||||  || ||||||||||| | |||||||||||||||||||||| ||| ||||||||||| |  |||| ||||||||    
2331351 gattttgtttcatcaaatgatcacttatgcatacatattcctttactatcatagttgttcattcttacatatcttgtttcttatataaaataaaac 2331446  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 408
Target Start/End: Complemental strand, 10110839 - 10110766
Alignment:
337 taattattatttcttctacctttttcctttttat--atgtgtgaccaaatatagggtccaaatccttgtgttca 408  Q
    |||| |||||||||||||||||||||||||||||   |||||||||||||| ||| | ||||||||||| ||||    
10110839 taatcattatttcttctacctttttcctttttatgcgtgtgtgaccaaatagaggattcaaatccttgtattca 10110766  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 27639191 - 27639266
Alignment:
333 tatttaattattatttcttctacctttttcctttttatatgt--gtgaccaaatatagggtccaaatccttgtgttc 407  Q
    |||||||||||||||| |||||| |||||| ||||||| |||  ||||||||||| |||||||||||| ||||||||    
27639191 tatttaattattattttttctacttttttc-tttttatgtgtctgtgaccaaatagagggtccaaatctttgtgttc 27639266  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 2294406 - 2294490
Alignment:
104 ataacacagcagcggaatattatatgtagatttgtcacattggtaagattttgcttcatacaatgatccattgtgcatacatatgc 189  Q
    |||||||||||| ||| |||||||||| ||||||||| | ||||  ||||||| |||||| |||||||| || |||||| ||||||    
2294406 ataacacagcaggggagtattatatgtggatttgtcata-tggtgggattttgtttcatataatgatccgttatgcatatatatgc 2294490  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 2304214 - 2304275
Alignment:
184 atatgcttttactatcatagttgttcatttttatatatcttgtttatggtatagaataaaac 245  Q
    |||||| |||| ||||||| ||||||||| ||||||||||||||| | ||||| ||||||||    
2304214 atatgcctttaatatcataattgttcattcttatatatcttgtttcttgtataaaataaaac 2304275  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 2321718 - 2321798
Alignment:
104 ataacacagcagcggaatattatatgtagatttgtcacattggtaagattttgcttcatacaatgatccattgtgcatacat 185  Q
    |||||||| ||| |||||||||||||| ||||| ||| || |||  ||||||| ||||||||||||||| || |||||||||    
2321718 ataacacaacaggggaatattatatgtggatttctcatat-ggtcggattttgtttcatacaatgatcccttatgcatacat 2321798  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 417
Target Start/End: Complemental strand, 43377664 - 43377579
Alignment:
333 tatttaattattatttcttctacctttttcctttt-tatatgtgtgaccaaatatagggtccaaatccttgtgttcattcaagagt 417  Q
    ||||||||| |||||| |||||| |||||  |||| | | |||||||||||||| |||||||||||| |||||| || ||||||||    
43377664 tatttaattgttattttttctacttttttatttttatgtgtgtgtgaccaaatagagggtccaaatctttgtgtccactcaagagt 43377579  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 43079148 - 43079071
Alignment:
330 tgatatttaattattatttcttctacctttttcctttttatatgtgtg--accaaatatagggtccaaatccttgtgt 405  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||  |||||||| |||||||||||||||||||    
43079148 tgatatttaattattatttcttctaccttttttctttttatgtgtgtgtaaccaaataaagggtccaaatccttgtgt 43079071  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 36286505 - 36286431
Alignment:
330 tgatatttaattattatttcttctacctttttcctttttatatgtgtgaccaaatatagggtccaaatccttgtgt 405  Q
    ||||||||||||||||||| ||||||||||||  ||| | | |||||||||||||| |  || |||||||||||||    
36286505 tgatatttaattattattttttctaccttttt-ttttatgtgtgtgtgaccaaatagaaagttcaaatccttgtgt 36286431  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Original strand, 43079187 - 43079220
Alignment:
372 tgtgtgaccaaatatagggtccaaatccttgtgt 405  Q
    |||||||||||||| |||||||||||||||||||    
43079187 tgtgtgaccaaatagagggtccaaatccttgtgt 43079220  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 25954345 - 25954268
Alignment:
330 tgatatttaattattatttcttctacctttttcctttttatatg--tgtgaccaaatatagggtccaaatccttgtgt 405  Q
    |||||||||||||||||||||| |||||||||||||||||| ||  |||||||||||| |||||||||||||||||||    
25954345 tgatatttaattattatttcttatacctttttcctttttatgtgtatgtgaccaaatagagggtccaaatccttgtgt 25954268  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 2021507 - 2021432
Alignment:
330 tgatatttaattattatttcttctacctttttcctttttatatgtg--tgaccaaatatagggtccaaatccttgt 403  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||||||||| |||||    
2021507 tgatatttaattattatttcttctatctttttcctttttatatgtgtctgaccaaatagagggtccaaattcttgt 2021432  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 740709 - 740784
Alignment:
332 atatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatccttgtgt 405  Q
    ||||||||||||||||||||||||||||||  ||||||  | |||||||||||||| ||| |||||||||||||||    
740709 atatttaattattatttcttctaccttttttttttttatgtttgtgtgaccaaataaaggatccaaatccttgtgt 740784  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 37047923 - 37047996
Alignment:
330 tgatatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatcctt 401  Q
    ||||||||||||||||||||||||| |||||| |||||||  | |||||||| ||||| |||||||||||||||    
37047923 tgatatttaattattatttcttctatcttttttctttttatgtgtgtgtgactaaatagagggtccaaatcctt 37047996  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 417
Target Start/End: Complemental strand, 16214569 - 16214484
Alignment:
333 tatttaattattatttcttctacctttttcctttttat--atgtgtgaccaaatatagggtccaaatccttgtgttcattcaagagt 417  Q
    |||||||||||||||| |||||| |||||| |||||||  ||||||||||||||| || ||||||||| |||||||||  |||||||    
16214569 tatttaattattattttttctac-tttttcatttttatgtatgtgtgaccaaatagagagtccaaatctttgtgttcacccaagagt 16214484  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 32384218 - 32384125
Alignment:
330 tgatatttaattattatttcttctacctttttcctttttatatg------tgtgaccaaatatagggtccaaatccttgtgttcattcaagagt 417  Q
    |||||||||||||||||||||| || ||||||||||||| | ||      |||||||||||| | ||||||||||||||||| || ||||||||    
32384218 tgatatttaattattatttcttttatctttttcctttttgtgtgtgtgactgtgaccaaatagaaggtccaaatccttgtgtccactcaagagt 32384125  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 7116697 - 7116621
Alignment:
330 tgatatttaattattatttcttctacctttttcctttt-tatatgtgtgaccaaatatagggtccaaatccttgtgt 405  Q
    |||||||||||||||||||||| |||||||||| |||| | | |||||||| ||||| | ||| |||||| ||||||    
7116697 tgatatttaattattatttcttatacctttttctttttatgtgtgtgtgactaaatagaaggttcaaatctttgtgt 7116621  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 45333128 - 45333205
Alignment:
330 tgatatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatccttgtgt 405  Q
    ||||||||||||||||||||||||| ||||||||||||||  | |||||||||||||| |||||||||||||||||||    
45333128 tgatatttaattattatttcttctagctttttcctttttatgtgtgtgtgaccaaatagagggtccaaatccttgtgt 45333205  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 48469489 - 48469566
Alignment:
330 tgatatttaattattatttcttctacctttttcctttttat--atgtgtgaccaaatatagggtccaaatccttgtgt 405  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||| | |||||||||||||    
48469489 tgatatttaattattatttcttctacctttttcctttttatgcgtgtgtgaccaaatagaggattcaaatccttgtgt 48469566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 48469449 - 48469406
Alignment:
372 tgtgtgaccaaatatagggtccaaatccttgtgttcattcaaga 415  Q
    |||||||||||||| ||||||||||||||||||| || ||||||    
48469449 tgtgtgaccaaatagagggtccaaatccttgtgtccactcaaga 48469406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 405
Target Start/End: Complemental strand, 26032729 - 26032660
Alignment:
336 ttaattattatttcttctacctttttcctttttatatgtgtgaccaaatatagggtccaaatccttgtgt 405  Q
    ||||||||||||| |||||| ||||| |||||||| ||||| || ||||| ||  |||||||| ||||||    
26032729 ttaattattattttttctactttttttctttttatgtgtgttactaaataaagtatccaaatctttgtgt 26032660  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 38552447 - 38552370
Alignment:
330 tgatatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatccttgtgt 405  Q
    ||||||||||||||||||||||||| ||||||||| ||||  | |||||||||||||| ||||| |||||||||||||    
38552447 tgatatttaattattatttcttctatctttttcctgtttatgtgtgtgtgaccaaatagagggttcaaatccttgtgt 38552370  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 37306104 - 37306179
Alignment:
330 tgatatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatccttgt 403  Q
    |||||||||||||||| ||||||||  |||||||||||||  | |||||||||||||| ||||| |||||||||||    
37306104 tgatatttaattattacttcttctaattttttcctttttatgtgtgtgtgaccaaatagagggttcaaatccttgt 37306179  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 33718052 - 33718119
Alignment:
330 tgatatttaattattatttcttctacctttttcctttttatatgtgtgaccaaatatagggtccaaat 397  Q
    ||||| |||||||||||||||||||||||||| |||||| | |||||| ||||||| | |||||||||    
33718052 tgatagttaattattatttcttctaccttttttctttttgtgtgtgtggccaaatagaaggtccaaat 33718119  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 377
Target Start/End: Original strand, 51017539 - 51017586
Alignment:
330 tgatatttaattattatttcttctacctttttcctttttatatgtgtg 377  Q
    ||||||||||||||||||| ||||| |||||||||||| || ||||||    
51017539 tgatatttaattattattttttctatctttttccttttaatgtgtgtg 51017586  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 33718010 - 33717969
Alignment:
374 tgtgaccaaatatagggtccaaatccttgtgttcattcaaga 415  Q
    |||||||||||| | ||||||||||||||||| |||||||||    
33718010 tgtgaccaaataaatggtccaaatccttgtgtccattcaaga 33717969  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 37991301 - 37991350
Alignment:
333 tatttaattattatttcttctacctttttcctttttatatgtgtgaccaaat 384  Q
    |||||||||| ||||| | |||||||||  ||||||||||||||||||||||    
37991301 tatttaattactatttttcctacctttt--ctttttatatgtgtgaccaaat 37991350  T

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Target: scaffold0385 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 12795 - 12749
Alignment:
330 tgatatttaattattatttcttctacctttttcctttttatatgtgt 376  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
12795 tgatatttaattattatttcttctacctttttcctttttatgtgtgt 12749  T

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Target: scaffold0385; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 406
Target Start/End: Complemental strand, 11984 - 11949
Alignment:
371 atgtgtgaccaaatatagggtccaaatccttgtgtt 406  Q
    ||||||||||||||| ||||||||||||||||||||    
11984 atgtgtgaccaaatagagggtccaaatccttgtgtt 11949  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 43788173 - 43788238
Alignment:
333 tatttaattattatttcttctacctttttcctttt-tatatgtgtgaccaaatatagggtccaaat 397  Q
    ||||||||| |||||| |||||| |||||| |||| ||| |||||||||||||| |||||||||||    
43788173 tatttaattgttattttttctacttttttctttttatatgtgtgtgaccaaataaagggtccaaat 43788238  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 4977465 - 4977417
Alignment:
336 ttaattattatttcttctacctttttcctttttatatgtgtgaccaaata 385  Q
    |||||| |||||| |||||| |||||||||||||||||| ||||||||||    
4977465 ttaattgttatttgttctac-tttttcctttttatatgtctgaccaaata 4977417  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 32890176 - 32890105
Alignment:
333 tatttaattattatttcttctacctttttccttttta--tatgtgtgaccaaatatagggtccaaatccttgt 403  Q
    |||||||||||||||| ||||| ||||||||||||||  | ||||||| |||||| | |||||||||| ||||    
32890176 tatttaattattattttttcta-ctttttcctttttatgtgtgtgtgatcaaataaatggtccaaatctttgt 32890105  T

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