View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_32 (Length: 420)
Name: NF1104_low_32
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 9575130 - 9575521
Alignment:
| Q |
17 |
attaccaacaataatcaataacaacattgtttacaaagacgatatagcacagccatatcaagataattcaaacatcaaaaggtcaagttatcaagcaaaa |
116 |
Q |
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| T |
9575130 |
attaacaacaataatcaataacaacattgtttacaaagacgatctagcacagccatatcaagataattcaaacatcaaaaggtcaagttatcaagcaaat |
9575229 |
T |
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| Q |
117 |
cnnnnnnnnggataaaagtttccctaattccaaatgaaggtaatagtgcattttagcaaacaatacagattctctagaatcatgagacataagagtcatc |
216 |
Q |
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| T |
9575230 |
tttttttttggataaaagtttccctaattccaaataaaggtaatagtgcattttggcaaacaatacagattctctaaaatcatgagacataagagtcatc |
9575329 |
T |
|
| Q |
217 |
aattcaacttatgtacattgcatagttacacaagaaaaacatagctaatcaatatcagttacttggagcaagtttcggcatattcctaattagaattgat |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9575330 |
aattcagcttatgtacattgcatagttacacaagaaaaacatatctaatcaatatcagttacttggtgcaagtttcggcatattcctaattagaattgat |
9575429 |
T |
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| Q |
317 |
tttgcctctaaagttgattctaatttaacttgaagtcataatttatagcttttgcctccaaacatgatttttacatttaaattcacggttca |
408 |
Q |
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| T |
9575430 |
tttgcctctaaagttgattctaatttaacttgaagtcataatttatagcttttgcctccaaacatgatttttacatttaaattcacggttca |
9575521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 20669735 - 20669686
Alignment:
| Q |
366 |
ttttgcctccaaacatgatttttacatttaaattcacggttcatctcact |
415 |
Q |
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| T |
20669735 |
ttttgcctccaaatgtgatttttacattcaaatttacggttcaactcact |
20669686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 38845759 - 38845791
Alignment:
| Q |
305 |
attagaattgattttgcctctaaagttgattct |
337 |
Q |
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| T |
38845759 |
attagaattgattttgcctctatagttgattct |
38845791 |
T |
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