View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1104_low_35 (Length: 403)

Name: NF1104_low_35
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1104_low_35
NF1104_low_35
[»] chr8 (5 HSPs)
chr8 (202-374)||(8871563-8871735)
chr8 (13-144)||(8871791-8871928)
chr8 (32-89)||(10543978-10544035)
chr8 (24-73)||(4424672-4424721)
chr8 (13-113)||(17834350-17834450)
[»] chr6 (2 HSPs)
chr6 (13-94)||(15610155-15610236)
chr6 (13-63)||(5827619-5827669)
[»] chr7 (5 HSPs)
chr7 (13-113)||(26754924-26755024)
chr7 (13-113)||(22911219-22911319)
chr7 (13-113)||(23040027-23040128)
chr7 (13-63)||(13596964-13597014)
chr7 (15-64)||(28544168-28544217)
[»] chr2 (1 HSPs)
chr2 (13-113)||(18579490-18579590)
[»] chr3 (4 HSPs)
chr3 (13-113)||(52585598-52585698)
chr3 (15-106)||(20685459-20685550)
chr3 (13-63)||(53581332-53581382)
chr3 (29-73)||(5561711-5561755)
[»] chr4 (3 HSPs)
chr4 (29-106)||(13501561-13501638)
chr4 (16-94)||(39774909-39774987)
chr4 (13-113)||(48026070-48026170)
[»] chr5 (2 HSPs)
chr5 (31-73)||(25585957-25585999)
chr5 (13-61)||(20174607-20174655)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 202 - 374
Target Start/End: Complemental strand, 8871735 - 8871563
Alignment:
Q  202 gataaataaatcaataatgagctgtatatatgggtgatacagattgaagaagattgtaagctaggcacagcaaatgacatagcagaagcagttcatcaaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  8871735 gataaataaatcaataatgagctgtatatatgggtgatacagattgaagaagactgtaagctaggcacagcaaatgatatagcagaagcagttcatcaaa 8871636  T
Q  302 tattcagctacatcaataatggtagctaaagaagcaagtagctataaccttggggggttgcagaagaataaag 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8871635 tattcagctacatcaataatggtagctaaagaagcaagtagctataaccttggggggttgcagaagaataaag 8871563  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 8871928 - 8871791
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttttcagat 112  Q
    |||||||||| ||||||||||||||||||||  ||| ||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||||  ||||    
T  8871928 aatattatgttaactttagtgttgagtttgtgaggatacaagcaaatgaggtagcccataaattagctaaggcgaccacatcatcagcttgtttcaagat 8871829  T
Q  113 t------ggaatacatgctacattgaacacattttaag 144  Q
    |      | ||||||| |||||||||||||||||||||    
T  8871828 tttggtagaaatacatactacattgaacacattttaag 8871791  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 10543978 - 10544035
Alignment:
Q  32 tgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgacc 89  Q
    ||||||||||||| ||| ||||||||||||||| || ||||||||| ||||| |||||    
T  10543978 tgttgagtttgtacggagacaagcaaatgaggttgttcataaattagctaaggcgacc 10544035  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 4424721 - 4424672
Alignment:
Q  24 aactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataa 73  Q
    |||| |||||||||||||||| ||| ||||||||||||||| | ||||||    
T  4424721 aactctagtgttgagtttgtacggagacaagcaaatgaggttgcccataa 4424672  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 17834450 - 17834350
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttttcagat 112  Q
    |||| |||||||||| |||||||||||||||  ||| |||| ||||||||     ||||| |||| ||||| || ||||||| |||||| |||| |||||    
T  17834450 aatactatgtcaactctagtgttgagtttgtgaggagacaaacaaatgagacaacccatagattagctaaggcggccacatcctcagctagtttccagat 17834351  T
Q  113 t 113  Q
    |    
T  17834350 t 17834350  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 15610155 - 15610236
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatc 94  Q
    |||| |||||||||| |||||||||||||||  ||| |||| |||||||||| | ||||| |||| ||||||||||||||||    
T  15610155 aatactatgtcaactctagtgttgagtttgtgaggagacaaacaaatgaggtagcccatagattagctaagacgaccacatc 15610236  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 5827619 - 5827669
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggacacaagcaaatgagg 63  Q
    |||||||| |||||| |||||||||||||||| ||| ||||||||||||||    
T  5827619 aatattatatcaactctagtgttgagtttgtaaggagacaagcaaatgagg 5827669  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 26754924 - 26755024
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttttcagat 112  Q
    ||||||||||||||| |||||||||||||||  ||| ||||||||||||||  | ||||| |||| ||||| || ||||||| ||| || ||||| ||||    
T  26754924 aatattatgtcaactatagtgttgagtttgtgaggagacaagcaaatgaggcagcccatagattatctaaggcggccacatcctcaactagtttttagat 26755023  T
Q  113 t 113  Q
    |    
T  26755024 t 26755024  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 22911219 - 22911319
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttttcagat 112  Q
    ||||||||||||||| |||| ||||||||||| ||| ||||||||||||||  | ||||| |||| |||||  | ||||||| ||| || |||| |||||    
T  22911219 aatattatgtcaactctagttttgagtttgtaaggagacaagcaaatgagggaggccatagattagctaaggaggccacatcttcatctagtttccagat 22911318  T
Q  113 t 113  Q
    |    
T  22911319 t 22911319  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 23040128 - 23040027
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggaca-caagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttttcaga 111  Q
    ||||||||||||||| |||||||||||||||| ||| | |||||||||||||  | ||||| |||| |||||  | ||||||| | |||  |||||||||    
T  23040128 aatattatgtcaactctagtgttgagtttgtaaggagaccaagcaaatgaggcagcccatagattaactaaggaggccacatctttagcaagttttcaga 23040029  T
Q  112 tt 113  Q
    ||    
T  23040028 tt 23040027  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 13596964 - 13597014
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggacacaagcaaatgagg 63  Q
    |||| |||||||||| |||||||||||||||  ||| ||||||||||||||    
T  13596964 aatactatgtcaactctagtgttgagtttgtgaggagacaagcaaatgagg 13597014  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 28544168 - 28544217
Alignment:
Q  15 tattatgtcaactttagtgttgagtttgtagggacacaagcaaatgaggt 64  Q
    |||||||| |||| |||||||||||||||| | | |||||||||||||||    
T  28544168 tattatgtaaactctagtgttgagtttgtacgaagacaagcaaatgaggt 28544217  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 18579590 - 18579490
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttttcagat 112  Q
    |||||||||||||||||||||||||||||||  ||| |||| |||||||||  | ||||| |||| |||||  | ||||||| |||||| |||| |||||    
T  18579590 aatattatgtcaactttagtgttgagtttgtgaggagacaaacaaatgaggcagcccatagattagctaagtaggccacatcttcagctagtttccagat 18579491  T
Q  113 t 113  Q
    |    
T  18579490 t 18579490  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 52585698 - 52585598
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttttcagat 112  Q
    ||||||||||||||| |||||||||||| ||   || ||||||||||||||  | ||||| |||| ||||| || ||||||| |||||| |||| |||||    
T  52585698 aatattatgtcaactctagtgttgagttcgtgatgagacaagcaaatgaggcagcccatagattaactaaggcggccacatcctcagctagtttccagat 52585599  T
Q  113 t 113  Q
    |    
T  52585598 t 52585598  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 20685459 - 20685550
Alignment:
Q  15 tattatgtcaactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttt 106  Q
    ||||||||||||| |||||||||||||||  ||| |||||||||||||   | ||||| |||| |||||  ||||||||| |||||| ||||    
T  20685459 tattatgtcaactctagtgttgagtttgtgaggagacaagcaaatgagacagcccatagattagctaaggagaccacatcttcagctagttt 20685550  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 53581332 - 53581382
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggacacaagcaaatgagg 63  Q
    ||||||||||||||| |||| ||||||||||| ||| ||||||||||||||    
T  53581332 aatattatgtcaactctagttttgagtttgtaaggagacaagcaaatgagg 53581382  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 5561755 - 5561711
Alignment:
Q  29 tagtgttgagtttgtagggacacaagcaaatgaggtggtccataa 73  Q
    |||||||||||||||| ||| ||||||||||||||| | ||||||    
T  5561755 tagtgttgagtttgtacggagacaagcaaatgaggttgcccataa 5561711  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 13501561 - 13501638
Alignment:
Q  29 tagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttt 106  Q
    |||||||||||||||| ||| ||||||||||||||| |||||||| ||| | ||| |||||  ||  |||||||||||    
T  13501561 tagtgttgagtttgtacggagacaagcaaatgaggttgtccataagttagcaaaggcgaccctattgtcagcttgttt 13501638  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 39774909 - 39774987
Alignment:
Q  16 attatgtcaactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatc 94  Q
    ||||||||||||||||||||||||||||  ||| |||| ||||| |||   |||||| |||| ||||| || |||||||    
T  39774909 attatgtcaactttagtgttgagtttgtgaggagacaaacaaataaggcaatccatagattaactaaggcggccacatc 39774987  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 48026170 - 48026070
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggacacaagcaaatgaggtggtccataaattacctaagacgaccacatcatcagcttgttttcagat 112  Q
    ||||||||||||||| |||||||||||||    ||| |||||||||||| |  | ||||| |||| ||||| ||||||| || ||| || ||||| ||||    
T  48026170 aatattatgtcaactctagtgttgagtttacgaggagacaagcaaatgaagcagcccatagattagctaaggcgaccacgtcttcaactagtttttagat 48026071  T
Q  113 t 113  Q
    |    
T  48026070 t 48026070  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 25585999 - 25585957
Alignment:
Q  31 gtgttgagtttgtagggacacaagcaaatgaggtggtccataa 73  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||    
T  25585999 gtgttgagtttgtacggagacaagcaaatgaggttgtccataa 25585957  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 20174607 - 20174655
Alignment:
Q  13 aatattatgtcaactttagtgttgagtttgtagggacacaagcaaatga 61  Q
    ||||||||||||| | |||||||||||||||  ||| ||||||||||||    
T  20174607 aatattatgtcaattctagtgttgagtttgtgaggagacaagcaaatga 20174655  T

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