View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1104_low_37 (Length: 396)
Name: NF1104_low_37
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 31603423 - 31603810
Alignment:
| Q |
1 |
ctcccgaccaaacaaagtttcgcagataatgatctagcaattcaatcaaagaaattgacctcacatttatttcaaaactaaaaataagcataccatgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31603423 |
ctcccgaccaaacaaagtttcgcagataatgatctagcaattcaatcaaagaaattgacctcacatttatttcaaaactacaaataagcataccatgaat |
31603522 |
T |
|
| Q |
101 |
gacagacttgactaactgaatccttcccattatggataaatgatagagtaccagcagtgaattcccagtgtattcgagaataagattttgatttatcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31603523 |
gacagacttgactaactgaatccttcccattatggataaatgatagagtaccagcagtgaattcccagtgtattcgagaataagattttgatttgtcaaa |
31603622 |
T |
|
| Q |
201 |
gctaatcaatttgccagagcattcgccatgccctcctataatggttcacaagctatatcaaacctcgtttacctttgcaaaaaatcatgatatcgtatac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31603623 |
gctaatcaatttgccagagcattcgccatgccctcctataatggttcacgggctatatcaaacctcgtttacctttgcaaaaaatcatgatatcgtatac |
31603722 |
T |
|
| Q |
301 |
atattagacgtgagtaggggtttggagtcccctgcgactaccatgcgatgcagcatacctttgaaaccaactgagaaatacctatgct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31603723 |
atattagacgtgagtaggggtttggagtcccctacgactaccatgcgatgcagcatacctttgaaaccaactgagaaatacctatgct |
31603810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 31605949 - 31606064
Alignment:
| Q |
62 |
cacatttatttcaaaactaaaaataagcataccatgaatgacagacttgactaactgaatccttcccattatggataaatgat----agagtaccagcag |
157 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
31605949 |
cacatttattttaaaactacaaataagcataccatgaa-gacagacttgactaatcgagtccttccagttatggataaatgatagggagagtaccggcag |
31606047 |
T |
|
| Q |
158 |
tgaattcccagtgtatt |
174 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
31606048 |
taaattcccagtgtatt |
31606064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 31606101 - 31606171
Alignment:
| Q |
177 |
agaataagattttgatttatcaaagctaatcaatttgccagagcattcgccatgccctcctataatggttca |
248 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
31606101 |
agaataagattttgatttgtcaaagctaatcaattagccagagcattcaccatg-cctcctaaaatggttca |
31606171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 31606219 - 31606247
Alignment:
| Q |
353 |
gcatacctttgaaaccaactgagaaatac |
381 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31606219 |
gcatacctttgaaaccaactgagaaatac |
31606247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University