View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1104_low_38 (Length: 394)
Name: NF1104_low_38
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 31184751 - 31185115
Alignment:
| Q |
1 |
accatatcattttttcataaaatacaccacttgatttaatattgaaactcgttgatttatgcaaaatataacataagttcatttgttcgcagagttggca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
31184751 |
accatatcattttttcataaaatacaccacttgatttaatattgaaactcgttgatttatgcaaaatataacataagttcatttgtttgtagagttggca |
31184850 |
T |
|
| Q |
101 |
caaacaatgaaagtgaatgagaaatgtgatgtttacagttttggagtacttgctttggaaatcataaagggagaacatcctggagatctcatttcattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31184851 |
caaacaatgaaagtgaatgagaaatgtgatgtctacagttttggagtacttgctttggaaatcataaagggagaacatcctggagatctcatttcattat |
31184950 |
T |
|
| Q |
201 |
atttgtcaccatctacaaggacattggctaatgatacattattggcaaatgttttagatcaaagacctcaaaaagttatgaaaccaattgatgaggaggt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
31184951 |
atttgtcaccatctacaaggacattggctaatgatacattattggcaaatgttttagatcaaagacctcaagaagttatgaaaccaattgatgaggaggt |
31185050 |
T |
|
| Q |
301 |
tatcttgattgcaaagttagcattttcttgcataaatccagagccacgctctcggccaaccatgg |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31185051 |
tatcttgattgcaaagttagcattttcttgcataaatccagagccacgctctcggccaaccatgg |
31185115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 82 - 365
Target Start/End: Original strand, 31103851 - 31104134
Alignment:
| Q |
82 |
tttgttcgcagagttggcacaaacaatgaaagtgaatgagaaatgtgatgtttacagttttggagtacttgctttggaaatcataaagggagaacatcct |
181 |
Q |
| |
|
|||||| ||||||||| | ||||||||| |||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||| ||| ||||||| |
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|
| T |
31103851 |
tttgtttgcagagttgtcccaaacaatggaagtgaatgagaaatgtgatgtatacagcttcggagtgcttgctttggaaatcataataggaaaacatcca |
31103950 |
T |
|
| Q |
182 |
ggagatctcatttcattatatttgtcaccatctacaaggacattggctaatgatacattattggcaaatgttttagatcaaagacctcaaaaagttatga |
281 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| || ||||||||||| |||||| || | ||||||||||||||||||||||||||||| | |
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|
| T |
31103951 |
ggagatctcatttcattatttttgtcaccatctacaagaccaacggctaatgatatgttattgacagaggttttagatcaaagacctcaaaaagttataa |
31104050 |
T |
|
| Q |
282 |
aaccaattgatgaggaggttatcttgattgcaaagttagcattttcttgcataaatccagagccacgctctcggccaaccatgg |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||| ||||| ||||| |||| |
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|
| T |
31104051 |
aaccaattgatgaggaggttatcttgattgcaaagttggcattttcttgcttaaatcaagttccacgttctcgtccaactatgg |
31104134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 82 - 331
Target Start/End: Original strand, 31059287 - 31059536
Alignment:
| Q |
82 |
tttgttcgcagagttggcacaaacaatgaaagtgaatgagaaatgtgatgtttacagttttggagtacttgctttggaaatcataaagggagaacatcct |
181 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||| |
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|
| T |
31059287 |
tttgtttgcagagttggcacaaacaatggaagtgaatgagaaatgtgatgtatacagttttggagtacttgctttggaaaccataatgggaaaacatcca |
31059386 |
T |
|
| Q |
182 |
ggagatctcatttcattatatttgtcaccatctacaaggacattggctaatgatacattattggcaaatgttttagatcaaagacctcaaaaagttatga |
281 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| || | ||||||| ||| || || || ||||||||||||||||||||||| |||| ||| |
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|
| T |
31059387 |
ggagatctcatttcattatttttgtcaccttctacgagaccgatggctaacaatatgttgttaacagatgttttagatcaaagacctcaacaagtaatgg |
31059486 |
T |
|
| Q |
282 |
aaccaattgatgaggaggttatcttgattgcaaagttagcattttcttgc |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||| ||||| |
|
|
| T |
31059487 |
aaccaattgatgaggaggttatcttgattgcaaggttggcatttgcttgc |
31059536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 89 - 365
Target Start/End: Original strand, 31141294 - 31141570
Alignment:
| Q |
89 |
gcagagttggcacaaacaatgaaagtgaatgagaaatgtgatgtttacagttttggagtacttgctttggaaatcataaagggagaacatcctggagatc |
188 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||||| |
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|
| T |
31141294 |
gcagagttggctcaaacaatggaggtgaatgagaaatgtgatgtatacagttttggagtacttgctttggaaatcatagtaggaaagcatcctggagatc |
31141393 |
T |
|
| Q |
189 |
tcatttcattatatttgtcaccatctacaaggacattggctaatgatacattattggcaaatgttttagatcaaagacctcaaaaagttatgaaaccaat |
288 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||| | |||||||| ||| || ||| | ||||||||||||||||||||||| | |||||||||||| | |
|
|
| T |
31141394 |
tcatttcattatttttatcacaatctacaaggctaatggctaataatatgttgttgatagatgttttagatcaaagacctcaacatgttatgaaaccagt |
31141493 |
T |
|
| Q |
289 |
tgatgaggaggttatcttgattgcaaagttagcattttcttgcataaatccagagccacgctctcggccaaccatgg |
365 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| ||||| | |||| | | ||||| ||||| |||||||||| |
|
|
| T |
31141494 |
tgatgaggaggttatcttgattgcaaggttggcatttgcttgcttgaatcaaaatccacgttctcgaccaaccatgg |
31141570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 89 - 365
Target Start/End: Original strand, 31160112 - 31160388
Alignment:
| Q |
89 |
gcagagttggcacaaacaatgaaagtgaatgagaaatgtgatgtttacagttttggagtacttgctttggaaatcataaagggagaacatcctggagatc |
188 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| | ||||||||||||| |
|
|
| T |
31160112 |
gcagagttggctcaaacaatggaggtgaatgagaaatgtgatgtatatagttttggagtacttgctttggaaatcatagtaggaaagcatcctggagatc |
31160211 |
T |
|
| Q |
189 |
tcatttcattatatttgtcaccatctacaaggacattggctaatgatacattattggcaaatgttttagatcaaagacctcaaaaagttatgaaaccaat |
288 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||| | |||||||| ||| || ||| | ||||||||||||||||||||||| | |||||||||||| | |
|
|
| T |
31160212 |
tcatttcattatttttatcacaatctacaaggctaatggctaataatatgttgttgatagatgttttagatcaaagacctcaacatgttatgaaaccagt |
31160311 |
T |
|
| Q |
289 |
tgatgaggaggttatcttgattgcaaagttagcattttcttgcataaatccagagccacgctctcggccaaccatgg |
365 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| ||||| | |||| | | ||||| ||||| |||||||||| |
|
|
| T |
31160312 |
tgatgaggaggttatcttgattgcaaggttggcatttgcttgcttgaatcaaaatccacgttctcgaccaaccatgg |
31160388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 89 - 365
Target Start/End: Original strand, 31242215 - 31242491
Alignment:
| Q |
89 |
gcagagttggcacaaacaatgaaagtgaatgagaaatgtgatgtttacagttttggagtacttgctttggaaatcataaagggagaacatcctggagatc |
188 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| | ||||||||||||| |
|
|
| T |
31242215 |
gcagagttggctcaaacaatggaggtgaatgagaaatgtgatgtatatagttttggagtacttgctttggaaatcatagtaggaaagcatcctggagatc |
31242314 |
T |
|
| Q |
189 |
tcatttcattatatttgtcaccatctacaaggacattggctaatgatacattattggcaaatgttttagatcaaagacctcaaaaagttatgaaaccaat |
288 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||| | |||||||| ||| || ||| | ||||||||||||||||||||||| | |||||||||||| | |
|
|
| T |
31242315 |
tcatttcattatttttatcacaatctacaaggctaatggctaataatatgttgttgatagatgttttagatcaaagacctcaacatgttatgaaaccagt |
31242414 |
T |
|
| Q |
289 |
tgatgaggaggttatcttgattgcaaagttagcattttcttgcataaatccagagccacgctctcggccaaccatgg |
365 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| ||||| | |||| | | ||||| ||||| |||||||||| |
|
|
| T |
31242415 |
tgatgaggaggttatcttgattgcaaggttggcatttgcttgcttgaatcaaaatccacgttctcgaccaaccatgg |
31242491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 17825047 - 17824990
Alignment:
| Q |
104 |
acaatgaaagtgaatgagaaatgtgatgtttacagttttggagtacttgctttggaaa |
161 |
Q |
| |
|
|||||| |||||||||||||||||||||| || |||||||| ||| | || ||||||| |
|
|
| T |
17825047 |
acaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaa |
17824990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 14607078 - 14607130
Alignment:
| Q |
110 |
aaagtgaatgagaaatgtgatgtttacagttttggagtacttgctttggaaat |
162 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||| | || |||||||| |
|
|
| T |
14607078 |
aaagtgaacgagaagtgtgatgtgtacagttttggagtattagcattggaaat |
14607130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 16026252 - 16026304
Alignment:
| Q |
110 |
aaagtgaatgagaaatgtgatgtttacagttttggagtacttgctttggaaat |
162 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||| | || |||||||| |
|
|
| T |
16026252 |
aaagtgaacgagaagtgtgatgtgtacagttttggagtattagcattggaaat |
16026304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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