View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_4 (Length: 751)
Name: NF1104_low_4
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 52824231 - 52824640
Alignment:
| Q |
1 |
tatcccaggttggaagtgtgaagatttccttgattcgccttcttcttctgttcactctcatgaactacaacaccagaatcatatagtgcatgatgatgct |
100 |
Q |
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| T |
52824231 |
tatcccaggttggaagtttgaagatttccttgattccccttcttcttctgttccctctcatgaactacaacaccagaatcatatagtgcatgatgatgct |
52824330 |
T |
|
| Q |
101 |
aattatcatattcatgaggaaaatattctggtttctttctctagcgagagcatgcgtaggatctgtgttcctcaagcaccactgtattattctgaaaaaa |
200 |
Q |
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| T |
52824331 |
aattatcatattcatgaggaaaatattctggtttctttctctagcgagagcatgcgtaggatctgtgttcctcaagcaccactgtattattctgaaaaaa |
52824430 |
T |
|
| Q |
201 |
tggataacagatcaaacaccgtcaatttcagcagcagtttgggggatttcacagttccacagataacaatccctcccaattaacattgtcacatcttatn |
300 |
Q |
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| T |
52824431 |
tggataacagatcaaacaccgtcaatttcagcagcagtttgggggatttcacagttccacagataacaatccctcccaattaacattgtcacatcttatt |
52824530 |
T |
|
| Q |
301 |
nnnnnnnnnnnncaacaatgatatagacatatctttagatttcatacattcattcaacatctgattttctctctagcactcttcttttcacatcatcaaa |
400 |
Q |
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| T |
52824531 |
atatatatatatcaacaatgatatagacatatctttagatttcatacattcattcaacatctgattttctctctagcactcttcttttcacatcatcaaa |
52824630 |
T |
|
| Q |
401 |
ctatcatatc |
410 |
Q |
| |
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| T |
52824631 |
ctgtcatatc |
52824640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 457 - 697
Target Start/End: Original strand, 52824696 - 52824937
Alignment:
| Q |
457 |
agatgtatacactacaggg-tgtacacaaaacgttgatgtagctctagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttc |
555 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52824696 |
agatgtatacactacaggggtgtacacaaaacgttgatgtagctctagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttc |
52824795 |
T |
|
| Q |
556 |
ttcataaatcagtgtaaaatattaaatatttctttcacattttgtaaataagatctttaattgaattaaataactcaacttgattgattaatttttgttt |
655 |
Q |
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| T |
52824796 |
ttcataaatcagtgtaaaatattaaatatgtctttcacattttgtaaataagatctttaattgaattaaataactcaacttgattgattaatttttgttt |
52824895 |
T |
|
| Q |
656 |
gcaacttgttaaaaggggtagtacgtcttgttaaatgggatt |
697 |
Q |
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| T |
52824896 |
gcaacttgttaaaaggggtagtacatcttgttaaatgagatt |
52824937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 697 - 745
Target Start/End: Original strand, 52824960 - 52825008
Alignment:
| Q |
697 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcatctcac |
745 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52824960 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcatatcac |
52825008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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