View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_42 (Length: 377)
Name: NF1104_low_42
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 35050531 - 35050859
Alignment:
| Q |
16 |
atgtgcaaggtggagagcaggattcagatatatttgaaatatcatgttattaattannnnnnnnagattcattttcatgcatggtgtaaaacttttttat |
115 |
Q |
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| T |
35050531 |
atgtgcagggtggagagcaggattcagatatagttgaaatatcatgttattaatttatttttttagattcattttcatgcatggtgtaaaacttttttat |
35050630 |
T |
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| Q |
116 |
acatgcattaaatcaaataacaccaaatgtatatgtttagagatattttagaaactaatctaaaaaagtgacattgtgatttgactgaatacatgtataa |
215 |
Q |
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| T |
35050631 |
acatgcattaaatcaaataacaccaaatgtatatgtttagagatattttagaaattaatctaaaaaagtgacattgtgatttgactgaat----gtataa |
35050726 |
T |
|
| Q |
216 |
aacggttttacactcttcgtgtatataaattaattccaattaggcatcaaaataacatgtaaatggttaataactaagaaatggtggaaacatctaagtc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35050727 |
aacggttttacactcttcgtgtatataaattaattccaattaggcatcaaaataacatgtaaatggttaataactaagaaatggtggaaacatctaagtc |
35050826 |
T |
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| Q |
316 |
tgtctttggaggtatcaatctacaaatgaaagc |
348 |
Q |
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| T |
35050827 |
tgtctttggaggtatcaatctacaaatgaaagc |
35050859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 28583337 - 28583262
Alignment:
| Q |
153 |
tagagatattttagaaactaatctaaaaaagtgacat--tgtgatttgactgaatacatgtataaaacggttttac |
226 |
Q |
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| T |
28583337 |
tagagatattttagaaattgatctataaaagtgacatggtgtgatttgattgaatatacgtataaaaaagttttac |
28583262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 6914018 - 6914091
Alignment:
| Q |
108 |
ttttttatacatgcattaaatcaaataacaccaaatgtatatgtttagagatattttagaaactaatctaaaaa |
181 |
Q |
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| T |
6914018 |
ttttttatatgtgtatcaaatcaaattacaccaaatagatatttttatagatattttagaaattaacctaaaaa |
6914091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 43970396 - 43970355
Alignment:
| Q |
92 |
atgcatggtgtaaaacttttttatacatgcattaaatcaaat |
133 |
Q |
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| T |
43970396 |
atgcatcgtgtaaaacttttttaaacatgcattcaatcaaat |
43970355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 181
Target Start/End: Original strand, 21051326 - 21051354
Alignment:
| Q |
153 |
tagagatattttagaaactaatctaaaaa |
181 |
Q |
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| T |
21051326 |
tagagatattttagaaactaatctaaaaa |
21051354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 42151560 - 42151596
Alignment:
| Q |
146 |
atatgtttagagatattttagaaactaatctaaaaaa |
182 |
Q |
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|||| ||||||||||| |||||||||||||||||||| |
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| T |
42151560 |
atatttttagagatatcttagaaactaatctaaaaaa |
42151596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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