View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1104_low_45 (Length: 373)
Name: NF1104_low_45
Description: NF1104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1104_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 49060707 - 49060963
Alignment:
| Q |
1 |
cttcttctgagctgatgggtcctcattgtcattaccattctctttatcctcgtcttcctcttcatcctgatcctttcttttcttagtcagctttccattt |
100 |
Q |
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| T |
49060707 |
cttcttctgagctgatgggtcctcattgtcattaccattctctttatcctcgtcttcgtcttcatcctgatcctttcttttcttagtcagctttccattt |
49060806 |
T |
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| Q |
101 |
tcatctgaattttctgctcctgcagatcttagtccactgccactgtcagaagtagttttgtctggtttactggttttgtttttctcctttggatcagact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49060807 |
tcatctgaattttctgctcctgcagatcttagtccactgccactgtcagaagtagttttgtctggtttactggttttgtttttctcctttggatcagact |
49060906 |
T |
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| Q |
201 |
tcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49060907 |
tcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
49060963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 47274418 - 47274489
Alignment:
| Q |
1 |
cttcttctgagctgatgggtcctcattgtcattaccattctctttatcctcgtcttcctcttcatcctgatc |
72 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |
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| T |
47274418 |
cttcttctgagctcatgggtcctcattgtcatgaccattctctttatcctcatctttgtcttcatcctgatc |
47274489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 47275104 - 47275162
Alignment:
| Q |
199 |
cttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
257 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
47275104 |
cttcttcttccgaattacatgctgccaaatggtctttagctcctgtaatctcacaggtt |
47275162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 47280787 - 47280847
Alignment:
| Q |
197 |
gacttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
257 |
Q |
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|||| ||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
47280787 |
gactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtt |
47280847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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